Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PCDHA5 (protocadherin alpha 5)

Identity

Alias_namesCNRS6
Alias_symbol (synonym)CNR6
CRNR6
CNRN6
PCDH-ALPHA5
Other alias
HGNC (Hugo) PCDHA5
LocusID (NCBI) 56143
Atlas_Id 71712
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140201361 and ends at 140391929 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHA5   8671
Cards
Entrez_Gene (NCBI)PCDHA5  56143  protocadherin alpha 5
AliasesCNR6; CNRN6; CNRS6; CRNR6; 
PCDH-ALPHA5
GeneCards (Weizmann)PCDHA5
Ensembl hg19 (Hinxton)ENSG00000204965 [Gene_View]  chr5:140201361-140391929 [Contig_View]  PCDHA5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204965 [Gene_View]  chr5:140201361-140391929 [Contig_View]  PCDHA5 [Vega]
ICGC DataPortalENSG00000204965
TCGA cBioPortalPCDHA5
AceView (NCBI)PCDHA5
Genatlas (Paris)PCDHA5
WikiGenes56143
SOURCE (Princeton)PCDHA5
Genetics Home Reference (NIH)PCDHA5
Genomic and cartography
GoldenPath hg19 (UCSC)PCDHA5  -     chr5:140201361-140391929 +  5q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PCDHA5  -     5q31.3   [Description]    (hg38-Dec_2013)
EnsemblPCDHA5 - 5q31.3 [CytoView hg19]  PCDHA5 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHA5 [Mapview hg19]  PCDHA5 [Mapview hg38]
OMIM606311   
Gene and transcription
Genbank (Entrez)AB208863 AF152313 AF152483 BC033735
RefSeq transcript (Entrez)NM_018908 NM_031501
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_000016 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)PCDHA5
Cluster EST : UnigeneHs.199343 [ NCBI ]
CGAP (NCI)Hs.199343
Alternative Splicing GalleryENSG00000204965
Gene ExpressionPCDHA5 [ NCBI-GEO ]   PCDHA5 [ EBI - ARRAY_EXPRESS ]   PCDHA5 [ SEEK ]   PCDHA5 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHA5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56143
GTEX Portal (Tissue expression)PCDHA5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5H7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5H7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5H7
Splice isoforms : SwissVarQ9Y5H7
PhosPhoSitePlusQ9Y5H7
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)   
Domain families : Pfam (NCBI)pfam00028    pfam08266   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHA5
DMDM Disease mutations56143
Blocks (Seattle)PCDHA5
SuperfamilyQ9Y5H7
Human Protein AtlasENSG00000204965
Peptide AtlasQ9Y5H7
HPRD07323
IPIIPI00001496   IPI00221113   IPI00377226   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5H7
IntAct (EBI)Q9Y5H7
FunCoupENSG00000204965
BioGRIDPCDHA5
STRING (EMBL)PCDHA5
ZODIACPCDHA5
Ontologies - Pathways
QuickGOQ9Y5H7
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  nervous system development  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  nervous system development  
NDEx NetworkPCDHA5
Atlas of Cancer Signalling NetworkPCDHA5
Wikipedia pathwaysPCDHA5
Orthology - Evolution
OrthoDB56143
GeneTree (enSembl)ENSG00000204965
Phylogenetic Trees/Animal Genes : TreeFamPCDHA5
HOVERGENQ9Y5H7
HOGENOMQ9Y5H7
Homologs : HomoloGenePCDHA5
Homology/Alignments : Family Browser (UCSC)PCDHA5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHA5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHA5
dbVarPCDHA5
ClinVarPCDHA5
1000_GenomesPCDHA5 
Exome Variant ServerPCDHA5
ExAC (Exome Aggregation Consortium)PCDHA5 (select the gene name)
Genetic variants : HAPMAP56143
Genomic Variants (DGV)PCDHA5 [DGVbeta]
DECIPHER (Syndromes)5:140201361-140391929  ENSG00000204965
CONAN: Copy Number AnalysisPCDHA5 
Mutations
ICGC Data PortalPCDHA5 
TCGA Data PortalPCDHA5 
Broad Tumor PortalPCDHA5
OASIS PortalPCDHA5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHA5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHA5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHA5
DgiDB (Drug Gene Interaction Database)PCDHA5
DoCM (Curated mutations)PCDHA5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHA5 (select a term)
intoGenPCDHA5
Cancer3DPCDHA5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606311   
Orphanet
MedgenPCDHA5
Genetic Testing Registry PCDHA5
NextProtQ9Y5H7 [Medical]
TSGene56143
GENETestsPCDHA5
Huge Navigator PCDHA5 [HugePedia]
snp3D : Map Gene to Disease56143
BioCentury BCIQPCDHA5
ClinGenPCDHA5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56143
Chemical/Pharm GKB GenePA33017
Clinical trialPCDHA5
Miscellaneous
canSAR (ICR)PCDHA5 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHA5
EVEXPCDHA5
GoPubMedPCDHA5
iHOPPCDHA5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:37:57 CET 2017

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