Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PCDHA6 (protocadherin alpha 6)

Identity

Alias_namesCNRS2
Alias_symbol (synonym)CNR2
CRNR2
PCDH-ALPHA6
Other aliasCNRN2
HGNC (Hugo) PCDHA6
LocusID (NCBI) 56142
Atlas_Id 71713
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140827922 and ends at 141012344 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHA6   8672
Cards
Entrez_Gene (NCBI)PCDHA6  56142  protocadherin alpha 6
AliasesCNR2; CNRN2; CNRS2; CRNR2; 
PCDH-ALPHA6
GeneCards (Weizmann)PCDHA6
Ensembl hg19 (Hinxton)ENSG00000081842 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000081842 [Gene_View]  chr5:140827922-141012344 [Contig_View]  PCDHA6 [Vega]
ICGC DataPortalENSG00000081842
TCGA cBioPortalPCDHA6
AceView (NCBI)PCDHA6
Genatlas (Paris)PCDHA6
WikiGenes56142
SOURCE (Princeton)PCDHA6
Genetics Home Reference (NIH)PCDHA6
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHA6  -     chr5:140827922-141012344 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHA6  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHA6 - 5q31.3 [CytoView hg19]  PCDHA6 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHA6 [Mapview hg19]  PCDHA6 [Mapview hg38]
OMIM606312   
Gene and transcription
Genbank (Entrez)AB209205 AF152314 AF152484 AF169694 BC019862
RefSeq transcript (Entrez)NM_018909 NM_031848 NM_031849
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHA6
Cluster EST : UnigeneHs.621225 [ NCBI ]
CGAP (NCI)Hs.621225
Alternative Splicing GalleryENSG00000081842
Gene ExpressionPCDHA6 [ NCBI-GEO ]   PCDHA6 [ EBI - ARRAY_EXPRESS ]   PCDHA6 [ SEEK ]   PCDHA6 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHA6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56142
GTEX Portal (Tissue expression)PCDHA6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UN73   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UN73  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UN73
Splice isoforms : SwissVarQ9UN73
PhosPhoSitePlusQ9UN73
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CBD    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_tail (PF15974)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam15974   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHA6
DMDM Disease mutations56142
Blocks (Seattle)PCDHA6
SuperfamilyQ9UN73
Human Protein AtlasENSG00000081842
Peptide AtlasQ9UN73
HPRD07324
IPIIPI00009042   IPI00982559   IPI00219063   IPI00745525   IPI00742778   
Protein Interaction databases
DIP (DOE-UCLA)Q9UN73
IntAct (EBI)Q9UN73
FunCoupENSG00000081842
BioGRIDPCDHA6
STRING (EMBL)PCDHA6
ZODIACPCDHA6
Ontologies - Pathways
QuickGOQ9UN73
Ontology : AmiGOcalcium ion binding  extracellular region  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
Ontology : EGO-EBIcalcium ion binding  extracellular region  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
NDEx NetworkPCDHA6
Atlas of Cancer Signalling NetworkPCDHA6
Wikipedia pathwaysPCDHA6
Orthology - Evolution
OrthoDB56142
GeneTree (enSembl)ENSG00000081842
Phylogenetic Trees/Animal Genes : TreeFamPCDHA6
HOVERGENQ9UN73
HOGENOMQ9UN73
Homologs : HomoloGenePCDHA6
Homology/Alignments : Family Browser (UCSC)PCDHA6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHA6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHA6
dbVarPCDHA6
ClinVarPCDHA6
1000_GenomesPCDHA6 
Exome Variant ServerPCDHA6
ExAC (Exome Aggregation Consortium)PCDHA6 (select the gene name)
Genetic variants : HAPMAP56142
Genomic Variants (DGV)PCDHA6 [DGVbeta]
DECIPHERPCDHA6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDHA6 
Mutations
ICGC Data PortalPCDHA6 
TCGA Data PortalPCDHA6 
Broad Tumor PortalPCDHA6
OASIS PortalPCDHA6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHA6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHA6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHA6
DgiDB (Drug Gene Interaction Database)PCDHA6
DoCM (Curated mutations)PCDHA6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHA6 (select a term)
intoGenPCDHA6
Cancer3DPCDHA6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606312   
Orphanet
MedgenPCDHA6
Genetic Testing Registry PCDHA6
NextProtQ9UN73 [Medical]
TSGene56142
GENETestsPCDHA6
Target ValidationPCDHA6
Huge Navigator PCDHA6 [HugePedia]
snp3D : Map Gene to Disease56142
BioCentury BCIQPCDHA6
ClinGenPCDHA6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56142
Chemical/Pharm GKB GenePA33018
Clinical trialPCDHA6
Miscellaneous
canSAR (ICR)PCDHA6 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHA6
EVEXPCDHA6
GoPubMedPCDHA6
iHOPPCDHA6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:41 CEST 2017

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