Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PCDHA7 (protocadherin alpha 7)

Identity

Alias_namesCNRS4
Alias_symbol (synonym)CNR4
CRNR4
Other aliasCNRN4
PCDH-ALPHA7
HGNC (Hugo) PCDHA7
LocusID (NCBI) 56141
Atlas_Id 71714
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140213969 and ends at 140391929 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHA7   8673
Cards
Entrez_Gene (NCBI)PCDHA7  56141  protocadherin alpha 7
AliasesCNR4; CNRN4; CNRS4; CRNR4; 
PCDH-ALPHA7
GeneCards (Weizmann)PCDHA7
Ensembl hg19 (Hinxton)ENSG00000204963 [Gene_View]  chr5:140213969-140391929 [Contig_View]  PCDHA7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204963 [Gene_View]  chr5:140213969-140391929 [Contig_View]  PCDHA7 [Vega]
ICGC DataPortalENSG00000204963
TCGA cBioPortalPCDHA7
AceView (NCBI)PCDHA7
Genatlas (Paris)PCDHA7
WikiGenes56141
SOURCE (Princeton)PCDHA7
Genetics Home Reference (NIH)PCDHA7
Genomic and cartography
GoldenPath hg19 (UCSC)PCDHA7  -     chr5:140213969-140391929 +  5q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PCDHA7  -     5q31.3   [Description]    (hg38-Dec_2013)
EnsemblPCDHA7 - 5q31.3 [CytoView hg19]  PCDHA7 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHA7 [Mapview hg19]  PCDHA7 [Mapview hg38]
OMIM606313   
Gene and transcription
Genbank (Entrez)AF152315 AF152485 BC148656 BC156820 BC156893
RefSeq transcript (Entrez)NM_018910 NM_031852
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_000016 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)PCDHA7
Cluster EST : UnigeneHs.199343 [ NCBI ]
CGAP (NCI)Hs.199343
Alternative Splicing GalleryENSG00000204963
Gene ExpressionPCDHA7 [ NCBI-GEO ]   PCDHA7 [ EBI - ARRAY_EXPRESS ]   PCDHA7 [ SEEK ]   PCDHA7 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHA7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56141
GTEX Portal (Tissue expression)PCDHA7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UN72   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UN72  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UN72
Splice isoforms : SwissVarQ9UN72
PhosPhoSitePlusQ9UN72
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)   
Domain families : Pfam (NCBI)pfam00028    pfam08266   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHA7
DMDM Disease mutations56141
Blocks (Seattle)PCDHA7
SuperfamilyQ9UN72
Human Protein AtlasENSG00000204963
Peptide AtlasQ9UN72
HPRD07325
IPIIPI00009041   IPI00010753   
Protein Interaction databases
DIP (DOE-UCLA)Q9UN72
IntAct (EBI)Q9UN72
FunCoupENSG00000204963
BioGRIDPCDHA7
STRING (EMBL)PCDHA7
ZODIACPCDHA7
Ontologies - Pathways
QuickGOQ9UN72
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  nervous system development  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  nervous system development  
NDEx NetworkPCDHA7
Atlas of Cancer Signalling NetworkPCDHA7
Wikipedia pathwaysPCDHA7
Orthology - Evolution
OrthoDB56141
GeneTree (enSembl)ENSG00000204963
Phylogenetic Trees/Animal Genes : TreeFamPCDHA7
HOVERGENQ9UN72
HOGENOMQ9UN72
Homologs : HomoloGenePCDHA7
Homology/Alignments : Family Browser (UCSC)PCDHA7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHA7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHA7
dbVarPCDHA7
ClinVarPCDHA7
1000_GenomesPCDHA7 
Exome Variant ServerPCDHA7
ExAC (Exome Aggregation Consortium)PCDHA7 (select the gene name)
Genetic variants : HAPMAP56141
Genomic Variants (DGV)PCDHA7 [DGVbeta]
DECIPHER (Syndromes)5:140213969-140391929  ENSG00000204963
CONAN: Copy Number AnalysisPCDHA7 
Mutations
ICGC Data PortalPCDHA7 
TCGA Data PortalPCDHA7 
Broad Tumor PortalPCDHA7
OASIS PortalPCDHA7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHA7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHA7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHA7
DgiDB (Drug Gene Interaction Database)PCDHA7
DoCM (Curated mutations)PCDHA7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHA7 (select a term)
intoGenPCDHA7
Cancer3DPCDHA7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606313   
Orphanet
MedgenPCDHA7
Genetic Testing Registry PCDHA7
NextProtQ9UN72 [Medical]
TSGene56141
GENETestsPCDHA7
Huge Navigator PCDHA7 [HugePedia]
snp3D : Map Gene to Disease56141
BioCentury BCIQPCDHA7
ClinGenPCDHA7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56141
Chemical/Pharm GKB GenePA33019
Clinical trialPCDHA7
Miscellaneous
canSAR (ICR)PCDHA7 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHA7
EVEXPCDHA7
GoPubMedPCDHA7
iHOPPCDHA7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:37:58 CET 2017

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