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PCDHA9 (protocadherin alpha 9)

Identity

Alias_symbol (synonym)KIAA0345
PCDH-ALPHA9
Other alias
HGNC (Hugo) PCDHA9
LocusID (NCBI) 9752
Atlas_Id 71716
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140227357 and ends at 140233744 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHA9   8675
Cards
Entrez_Gene (NCBI)PCDHA9  9752  protocadherin alpha 9
AliasesPCDH-ALPHA9
GeneCards (Weizmann)PCDHA9
Ensembl hg19 (Hinxton)ENSG00000204961 [Gene_View]  chr5:140227357-140233744 [Contig_View]  PCDHA9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204961 [Gene_View]  chr5:140227357-140233744 [Contig_View]  PCDHA9 [Vega]
ICGC DataPortalENSG00000204961
TCGA cBioPortalPCDHA9
AceView (NCBI)PCDHA9
Genatlas (Paris)PCDHA9
WikiGenes9752
SOURCE (Princeton)PCDHA9
Genetics Home Reference (NIH)PCDHA9
Genomic and cartography
GoldenPath hg19 (UCSC)PCDHA9  -     chr5:140227357-140233744 +  5q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PCDHA9  -     5q31.3   [Description]    (hg38-Dec_2013)
EnsemblPCDHA9 - 5q31.3 [CytoView hg19]  PCDHA9 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHA9 [Mapview hg19]  PCDHA9 [Mapview hg38]
OMIM606315   
Gene and transcription
Genbank (Entrez)AB002343 AF152317 AF152487 AJ007610 AK314303
RefSeq transcript (Entrez)NM_014005 NM_031857
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_000016 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)PCDHA9
Cluster EST : UnigeneHs.199343 [ NCBI ]
CGAP (NCI)Hs.199343
Alternative Splicing GalleryENSG00000204961
Gene ExpressionPCDHA9 [ NCBI-GEO ]   PCDHA9 [ EBI - ARRAY_EXPRESS ]   PCDHA9 [ SEEK ]   PCDHA9 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHA9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9752
GTEX Portal (Tissue expression)PCDHA9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5H5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5H5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5H5
Splice isoforms : SwissVarQ9Y5H5
PhosPhoSitePlusQ9Y5H5
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)   
Domain families : Pfam (NCBI)pfam00028    pfam08266   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHA9
DMDM Disease mutations9752
Blocks (Seattle)PCDHA9
SuperfamilyQ9Y5H5
Human Protein AtlasENSG00000204961
Peptide AtlasQ9Y5H5
HPRD07327
IPIIPI00001493   IPI00220928   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5H5
IntAct (EBI)Q9Y5H5
FunCoupENSG00000204961
BioGRIDPCDHA9
STRING (EMBL)PCDHA9
ZODIACPCDHA9
Ontologies - Pathways
QuickGOQ9Y5H5
Ontology : AmiGOcalcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  
Ontology : EGO-EBIcalcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  
NDEx NetworkPCDHA9
Atlas of Cancer Signalling NetworkPCDHA9
Wikipedia pathwaysPCDHA9
Orthology - Evolution
OrthoDB9752
GeneTree (enSembl)ENSG00000204961
Phylogenetic Trees/Animal Genes : TreeFamPCDHA9
HOVERGENQ9Y5H5
HOGENOMQ9Y5H5
Homologs : HomoloGenePCDHA9
Homology/Alignments : Family Browser (UCSC)PCDHA9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHA9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHA9
dbVarPCDHA9
ClinVarPCDHA9
1000_GenomesPCDHA9 
Exome Variant ServerPCDHA9
ExAC (Exome Aggregation Consortium)PCDHA9 (select the gene name)
Genetic variants : HAPMAP9752
Genomic Variants (DGV)PCDHA9 [DGVbeta]
DECIPHER (Syndromes)5:140227357-140233744  ENSG00000204961
CONAN: Copy Number AnalysisPCDHA9 
Mutations
ICGC Data PortalPCDHA9 
TCGA Data PortalPCDHA9 
Broad Tumor PortalPCDHA9
OASIS PortalPCDHA9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHA9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHA9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHA9
DgiDB (Drug Gene Interaction Database)PCDHA9
DoCM (Curated mutations)PCDHA9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHA9 (select a term)
intoGenPCDHA9
Cancer3DPCDHA9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606315   
Orphanet
MedgenPCDHA9
Genetic Testing Registry PCDHA9
NextProtQ9Y5H5 [Medical]
TSGene9752
GENETestsPCDHA9
Huge Navigator PCDHA9 [HugePedia]
snp3D : Map Gene to Disease9752
BioCentury BCIQPCDHA9
ClinGenPCDHA9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9752
Chemical/Pharm GKB GenePA33021
Clinical trialPCDHA9
Miscellaneous
canSAR (ICR)PCDHA9 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHA9
EVEXPCDHA9
GoPubMedPCDHA9
iHOPPCDHA9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:37:58 CET 2017

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