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PCDHA@ (protocadherin alpha cluster, complex locus)

Identity

Alias_namesCNRS1
protocadherin alpha cluster
Alias_symbol (synonym)CNR1
Other alias
HGNC (Hugo) PCDHA@
LocusID (NCBI) 56117
Atlas_Id 51430
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140786136 and ends at 141012344 bp from pter
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)PCDHA@   8662
Cards
Entrez_Gene (NCBI)PCDHA@  56117  protocadherin alpha cluster, complex locus
AliasesCNR1; CNRS1
GeneCards (Weizmann)PCDHA@
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr5:140786136-141012344 [Contig_View]  PCDHA@ [Vega]
TCGA cBioPortalPCDHA@
AceView (NCBI)PCDHA@
Genatlas (Paris)PCDHA@
WikiGenes56117
SOURCE (Princeton)PCDHA@
Genetics Home Reference (NIH)PCDHA@
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHA@  -     chr5:140786136-141012344 -  hg38-Dec_2013   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHA@  -     hg38-Dec_2013   [Description]    (hg19-Feb_2009)
PCDHA@ - hg38-Dec_2013 [CytoView hg19]  PCDHA@ - hg38-Dec_2013 [CytoView hg38]
Mapping of homologs : NCBIPCDHA@ [Mapview hg19]  PCDHA@ [Mapview hg38]
OMIM604966   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHA@
Gene ExpressionPCDHA@ [ NCBI-GEO ]   PCDHA@ [ EBI - ARRAY_EXPRESS ]   PCDHA@ [ SEEK ]   PCDHA@ [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHA@ [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)56117
GTEX Portal (Tissue expression)PCDHA@
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PCDHA@
DMDM Disease mutations56117
Blocks (Seattle)PCDHA@
Protein Interaction databases
BioGRIDPCDHA@
STRING (EMBL)PCDHA@
ZODIACPCDHA@
Ontologies - Pathways
Huge Navigator PCDHA@ [HugePedia]
snp3D : Map Gene to Disease56117
BioCentury BCIQPCDHA@
ClinGenPCDHA@
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56117
Chemical/Pharm GKB GenePA35501
Clinical trialPCDHA@
Miscellaneous
canSAR (ICR)PCDHA@ (select the gene name)
DataMed IndexPCDHA@
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHA@
EVEXPCDHA@
GoPubMedPCDHA@
iHOPPCDHA@
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu May 2 13:03:37 CEST 2019

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