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PCDHAC2 (protocadherin alpha subfamily C, 2)

Identity

Alias_symbol (synonym)PCDH-ALPHA-C2
Other alias
HGNC (Hugo) PCDHAC2
LocusID (NCBI) 56134
Atlas_Id 71718
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140345747 and ends at 140391929 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHAC2   8677
Cards
Entrez_Gene (NCBI)PCDHAC2  56134  protocadherin alpha subfamily C, 2
AliasesPCDH-ALPHA-C2
GeneCards (Weizmann)PCDHAC2
Ensembl hg19 (Hinxton)ENSG00000243232 [Gene_View]  chr5:140345747-140391929 [Contig_View]  PCDHAC2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000243232 [Gene_View]  chr5:140345747-140391929 [Contig_View]  PCDHAC2 [Vega]
ICGC DataPortalENSG00000243232
TCGA cBioPortalPCDHAC2
AceView (NCBI)PCDHAC2
Genatlas (Paris)PCDHAC2
WikiGenes56134
SOURCE (Princeton)PCDHAC2
Genetics Home Reference (NIH)PCDHAC2
Genomic and cartography
GoldenPath hg19 (UCSC)PCDHAC2  -     chr5:140345747-140391929 +  5q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PCDHAC2  -     5q31.3   [Description]    (hg38-Dec_2013)
EnsemblPCDHAC2 - 5q31.3 [CytoView hg19]  PCDHAC2 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHAC2 [Mapview hg19]  PCDHAC2 [Mapview hg38]
OMIM606321   
Gene and transcription
Genbank (Entrez)AF152304 AF152474 AK123867 BC063288 BC104776
RefSeq transcript (Entrez)NM_018899 NM_031883
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_000016 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)PCDHAC2
Cluster EST : UnigeneHs.199343 [ NCBI ]
CGAP (NCI)Hs.199343
Alternative Splicing GalleryENSG00000243232
Gene ExpressionPCDHAC2 [ NCBI-GEO ]   PCDHAC2 [ EBI - ARRAY_EXPRESS ]   PCDHAC2 [ SEEK ]   PCDHAC2 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHAC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56134
GTEX Portal (Tissue expression)PCDHAC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5I4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5I4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5I4
Splice isoforms : SwissVarQ9Y5I4
PhosPhoSitePlusQ9Y5I4
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_N    PCDHAC2   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)   
Domain families : Pfam (NCBI)pfam00028    pfam08266   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHAC2
DMDM Disease mutations56134
Blocks (Seattle)PCDHAC2
SuperfamilyQ9Y5I4
Human Protein AtlasENSG00000243232
Peptide AtlasQ9Y5I4
HPRD07331
IPIIPI00001516   IPI00218806   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5I4
IntAct (EBI)Q9Y5I4
FunCoupENSG00000243232
BioGRIDPCDHAC2
STRING (EMBL)PCDHAC2
ZODIACPCDHAC2
Ontologies - Pathways
QuickGOQ9Y5I4
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  nervous system development  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  nervous system development  
NDEx NetworkPCDHAC2
Atlas of Cancer Signalling NetworkPCDHAC2
Wikipedia pathwaysPCDHAC2
Orthology - Evolution
OrthoDB56134
GeneTree (enSembl)ENSG00000243232
Phylogenetic Trees/Animal Genes : TreeFamPCDHAC2
HOVERGENQ9Y5I4
HOGENOMQ9Y5I4
Homologs : HomoloGenePCDHAC2
Homology/Alignments : Family Browser (UCSC)PCDHAC2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHAC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHAC2
dbVarPCDHAC2
ClinVarPCDHAC2
1000_GenomesPCDHAC2 
Exome Variant ServerPCDHAC2
ExAC (Exome Aggregation Consortium)PCDHAC2 (select the gene name)
Genetic variants : HAPMAP56134
Genomic Variants (DGV)PCDHAC2 [DGVbeta]
DECIPHER (Syndromes)5:140345747-140391929  ENSG00000243232
CONAN: Copy Number AnalysisPCDHAC2 
Mutations
ICGC Data PortalPCDHAC2 
TCGA Data PortalPCDHAC2 
Broad Tumor PortalPCDHAC2
OASIS PortalPCDHAC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHAC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHAC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHAC2
DgiDB (Drug Gene Interaction Database)PCDHAC2
DoCM (Curated mutations)PCDHAC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHAC2 (select a term)
intoGenPCDHAC2
Cancer3DPCDHAC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606321   
Orphanet
MedgenPCDHAC2
Genetic Testing Registry PCDHAC2
NextProtQ9Y5I4 [Medical]
TSGene56134
GENETestsPCDHAC2
Huge Navigator PCDHAC2 [HugePedia]
snp3D : Map Gene to Disease56134
BioCentury BCIQPCDHAC2
ClinGenPCDHAC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56134
Chemical/Pharm GKB GenePA33023
Clinical trialPCDHAC2
Miscellaneous
canSAR (ICR)PCDHAC2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHAC2
EVEXPCDHAC2
GoPubMedPCDHAC2
iHOPPCDHAC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:37:58 CET 2017

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