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PCDHB10 (protocadherin beta 10)

Identity

Other aliasPCDH-BETA10
PCHB10
HGNC (Hugo) PCDHB10
LocusID (NCBI) 56126
Atlas_Id 71720
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141192379 and ends at 141195640 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHB10   8681
Cards
Entrez_Gene (NCBI)PCDHB10  56126  protocadherin beta 10
AliasesPCDH-BETA10; PCHB10
GeneCards (Weizmann)PCDHB10
Ensembl hg19 (Hinxton)ENSG00000120324 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120324 [Gene_View]  chr5:141192379-141195640 [Contig_View]  PCDHB10 [Vega]
ICGC DataPortalENSG00000120324
TCGA cBioPortalPCDHB10
AceView (NCBI)PCDHB10
Genatlas (Paris)PCDHB10
WikiGenes56126
SOURCE (Princeton)PCDHB10
Genetics Home Reference (NIH)PCDHB10
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHB10  -     chr5:141192379-141195640 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHB10  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHB10 - 5q31.3 [CytoView hg19]  PCDHB10 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHB10 [Mapview hg19]  PCDHB10 [Mapview hg38]
OMIM606336   
Gene and transcription
Genbank (Entrez)AF131761 AF152489 AF217748 AK056391 AK315583
RefSeq transcript (Entrez)NM_018930
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHB10
Cluster EST : UnigeneHs.657953 [ NCBI ]
CGAP (NCI)Hs.657953
Alternative Splicing GalleryENSG00000120324
Gene ExpressionPCDHB10 [ NCBI-GEO ]   PCDHB10 [ EBI - ARRAY_EXPRESS ]   PCDHB10 [ SEEK ]   PCDHB10 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHB10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56126
GTEX Portal (Tissue expression)PCDHB10
Human Protein AtlasENSG00000120324-PCDHB10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UN67   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UN67  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UN67
Splice isoforms : SwissVarQ9UN67
PhosPhoSitePlusQ9UN67
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_C    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_C_2 (PF16492)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam16492   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHB10
DMDM Disease mutations56126
Blocks (Seattle)PCDHB10
SuperfamilyQ9UN67
Human Protein Atlas [tissue]ENSG00000120324-PCDHB10 [tissue]
Peptide AtlasQ9UN67
HPRD06954
IPIIPI00009034   IPI00973433   IPI00973516   
Protein Interaction databases
DIP (DOE-UCLA)Q9UN67
IntAct (EBI)Q9UN67
FunCoupENSG00000120324
BioGRIDPCDHB10
STRING (EMBL)PCDHB10
ZODIACPCDHB10
Ontologies - Pathways
QuickGOQ9UN67
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  chemical synaptic transmission  synapse assembly  integral component of membrane  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  chemical synaptic transmission  synapse assembly  integral component of membrane  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  
NDEx NetworkPCDHB10
Atlas of Cancer Signalling NetworkPCDHB10
Wikipedia pathwaysPCDHB10
Orthology - Evolution
OrthoDB56126
GeneTree (enSembl)ENSG00000120324
Phylogenetic Trees/Animal Genes : TreeFamPCDHB10
HOVERGENQ9UN67
HOGENOMQ9UN67
Homologs : HomoloGenePCDHB10
Homology/Alignments : Family Browser (UCSC)PCDHB10
Gene fusions - Rearrangements
Fusion: Tumor Portal PCDHB10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHB10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHB10
dbVarPCDHB10
ClinVarPCDHB10
1000_GenomesPCDHB10 
Exome Variant ServerPCDHB10
ExAC (Exome Aggregation Consortium)ENSG00000120324
GNOMAD BrowserENSG00000120324
Genetic variants : HAPMAP56126
Genomic Variants (DGV)PCDHB10 [DGVbeta]
DECIPHERPCDHB10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDHB10 
Mutations
ICGC Data PortalPCDHB10 
TCGA Data PortalPCDHB10 
Broad Tumor PortalPCDHB10
OASIS PortalPCDHB10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHB10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHB10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHB10
DgiDB (Drug Gene Interaction Database)PCDHB10
DoCM (Curated mutations)PCDHB10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHB10 (select a term)
intoGenPCDHB10
Cancer3DPCDHB10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606336   
Orphanet
MedgenPCDHB10
Genetic Testing Registry PCDHB10
NextProtQ9UN67 [Medical]
TSGene56126
GENETestsPCDHB10
Target ValidationPCDHB10
Huge Navigator PCDHB10 [HugePedia]
snp3D : Map Gene to Disease56126
BioCentury BCIQPCDHB10
ClinGenPCDHB10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56126
Chemical/Pharm GKB GenePA33026
Clinical trialPCDHB10
Miscellaneous
canSAR (ICR)PCDHB10 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHB10
EVEXPCDHB10
GoPubMedPCDHB10
iHOPPCDHB10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:21:54 CET 2017

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