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PCDHB11 (protocadherin beta 11)

Identity

Alias_symbol (synonym)PCDH-BETA11
ME2
Other alias
HGNC (Hugo) PCDHB11
LocusID (NCBI) 56125
Atlas_Id 71721
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140579348 and ends at 140582618 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHB11   8682
Cards
Entrez_Gene (NCBI)PCDHB11  56125  protocadherin beta 11
AliasesME2; PCDH-BETA11
GeneCards (Weizmann)PCDHB11
Ensembl hg19 (Hinxton) [Gene_View]  chr5:140579348-140582618 [Contig_View]  PCDHB11 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:140579348-140582618 [Contig_View]  PCDHB11 [Vega]
TCGA cBioPortalPCDHB11
AceView (NCBI)PCDHB11
Genatlas (Paris)PCDHB11
WikiGenes56125
SOURCE (Princeton)PCDHB11
Genetics Home Reference (NIH)PCDHB11
Genomic and cartography
GoldenPath hg19 (UCSC)PCDHB11  -     chr5:140579348-140582618 +  5q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PCDHB11  -     5q31.3   [Description]    (hg38-Dec_2013)
EnsemblPCDHB11 - 5q31.3 [CytoView hg19]  PCDHB11 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHB11 [Mapview hg19]  PCDHB11 [Mapview hg38]
OMIM606337   
Gene and transcription
Genbank (Entrez)AB209225 AF152490 AF217747 AK299719 AK313428
RefSeq transcript (Entrez)NM_018931
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_000017 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)PCDHB11
Cluster EST : UnigeneHs.283084 [ NCBI ]
CGAP (NCI)Hs.283084
Gene ExpressionPCDHB11 [ NCBI-GEO ]   PCDHB11 [ EBI - ARRAY_EXPRESS ]   PCDHB11 [ SEEK ]   PCDHB11 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHB11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56125
GTEX Portal (Tissue expression)PCDHB11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5F2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5F2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5F2
Splice isoforms : SwissVarQ9Y5F2
PhosPhoSitePlusQ9Y5F2
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_N    PCDHB11   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)   
Domain families : Pfam (NCBI)pfam00028    pfam08266   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHB11
DMDM Disease mutations56125
Blocks (Seattle)PCDHB11
SuperfamilyQ9Y5F2
Peptide AtlasQ9Y5F2
HPRD06955
IPIIPI00001451   IPI01011968   IPI00005643   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5F2
IntAct (EBI)Q9Y5F2
BioGRIDPCDHB11
STRING (EMBL)PCDHB11
ZODIACPCDHB11
Ontologies - Pathways
QuickGOQ9Y5F2
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  synaptic transmission  nervous system development  synapse assembly  integral component of membrane  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  synaptic transmission  nervous system development  synapse assembly  integral component of membrane  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  
NDEx NetworkPCDHB11
Atlas of Cancer Signalling NetworkPCDHB11
Wikipedia pathwaysPCDHB11
Orthology - Evolution
OrthoDB56125
Phylogenetic Trees/Animal Genes : TreeFamPCDHB11
HOVERGENQ9Y5F2
HOGENOMQ9Y5F2
Homologs : HomoloGenePCDHB11
Homology/Alignments : Family Browser (UCSC)PCDHB11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHB11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHB11
dbVarPCDHB11
ClinVarPCDHB11
1000_GenomesPCDHB11 
Exome Variant ServerPCDHB11
ExAC (Exome Aggregation Consortium)PCDHB11 (select the gene name)
Genetic variants : HAPMAP56125
Genomic Variants (DGV)PCDHB11 [DGVbeta]
DECIPHER (Syndromes)5:140579348-140582618  
CONAN: Copy Number AnalysisPCDHB11 
Mutations
ICGC Data PortalPCDHB11 
TCGA Data PortalPCDHB11 
Broad Tumor PortalPCDHB11
OASIS PortalPCDHB11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHB11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHB11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHB11
DgiDB (Drug Gene Interaction Database)PCDHB11
DoCM (Curated mutations)PCDHB11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHB11 (select a term)
intoGenPCDHB11
Cancer3DPCDHB11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606337   
Orphanet
MedgenPCDHB11
Genetic Testing Registry PCDHB11
NextProtQ9Y5F2 [Medical]
TSGene56125
GENETestsPCDHB11
Huge Navigator PCDHB11 [HugePedia]
snp3D : Map Gene to Disease56125
BioCentury BCIQPCDHB11
ClinGenPCDHB11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56125
Chemical/Pharm GKB GenePA33027
Clinical trialPCDHB11
Miscellaneous
canSAR (ICR)PCDHB11 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHB11
EVEXPCDHB11
GoPubMedPCDHB11
iHOPPCDHB11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:37:59 CET 2017

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