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PCDHB12 (protocadherin beta 12)

Identity

Alias_symbol (synonym)PCDH-BETA12
Other alias
HGNC (Hugo) PCDHB12
LocusID (NCBI) 56124
Atlas_Id 71722
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141208719 and ends at 141212126 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHB12   8683
Cards
Entrez_Gene (NCBI)PCDHB12  56124  protocadherin beta 12
AliasesPCDH-BETA12
GeneCards (Weizmann)PCDHB12
Ensembl hg19 (Hinxton)ENSG00000120328 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120328 [Gene_View]  chr5:141208719-141212126 [Contig_View]  PCDHB12 [Vega]
ICGC DataPortalENSG00000120328
TCGA cBioPortalPCDHB12
AceView (NCBI)PCDHB12
Genatlas (Paris)PCDHB12
WikiGenes56124
SOURCE (Princeton)PCDHB12
Genetics Home Reference (NIH)PCDHB12
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHB12  -     chr5:141208719-141212126 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHB12  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHB12 - 5q31.3 [CytoView hg19]  PCDHB12 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHB12 [Mapview hg19]  PCDHB12 [Mapview hg38]
OMIM606338   
Gene and transcription
Genbank (Entrez)AF152491 AF217746 AK293336 AK316160 BC045637
RefSeq transcript (Entrez)NM_018932
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHB12
Cluster EST : UnigeneHs.744755 [ NCBI ]
CGAP (NCI)Hs.744755
Alternative Splicing GalleryENSG00000120328
Gene ExpressionPCDHB12 [ NCBI-GEO ]   PCDHB12 [ EBI - ARRAY_EXPRESS ]   PCDHB12 [ SEEK ]   PCDHB12 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHB12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56124
GTEX Portal (Tissue expression)PCDHB12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5F1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5F1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5F1
Splice isoforms : SwissVarQ9Y5F1
PhosPhoSitePlusQ9Y5F1
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_C    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_C_2 (PF16492)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam16492   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHB12
DMDM Disease mutations56124
Blocks (Seattle)PCDHB12
SuperfamilyQ9Y5F1
Human Protein AtlasENSG00000120328
Peptide AtlasQ9Y5F1
HPRD06956
IPIIPI00001450   IPI01009340   IPI01012424   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5F1
IntAct (EBI)Q9Y5F1
FunCoupENSG00000120328
BioGRIDPCDHB12
STRING (EMBL)PCDHB12
ZODIACPCDHB12
Ontologies - Pathways
QuickGOQ9Y5F1
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  chemical synaptic transmission  nervous system development  synapse assembly  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  chemical synaptic transmission  nervous system development  synapse assembly  
NDEx NetworkPCDHB12
Atlas of Cancer Signalling NetworkPCDHB12
Wikipedia pathwaysPCDHB12
Orthology - Evolution
OrthoDB56124
GeneTree (enSembl)ENSG00000120328
Phylogenetic Trees/Animal Genes : TreeFamPCDHB12
HOVERGENQ9Y5F1
HOGENOMQ9Y5F1
Homologs : HomoloGenePCDHB12
Homology/Alignments : Family Browser (UCSC)PCDHB12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHB12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHB12
dbVarPCDHB12
ClinVarPCDHB12
1000_GenomesPCDHB12 
Exome Variant ServerPCDHB12
ExAC (Exome Aggregation Consortium)PCDHB12 (select the gene name)
Genetic variants : HAPMAP56124
Genomic Variants (DGV)PCDHB12 [DGVbeta]
DECIPHERPCDHB12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDHB12 
Mutations
ICGC Data PortalPCDHB12 
TCGA Data PortalPCDHB12 
Broad Tumor PortalPCDHB12
OASIS PortalPCDHB12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHB12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHB12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHB12
DgiDB (Drug Gene Interaction Database)PCDHB12
DoCM (Curated mutations)PCDHB12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHB12 (select a term)
intoGenPCDHB12
Cancer3DPCDHB12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606338   
Orphanet
MedgenPCDHB12
Genetic Testing Registry PCDHB12
NextProtQ9Y5F1 [Medical]
TSGene56124
GENETestsPCDHB12
Target ValidationPCDHB12
Huge Navigator PCDHB12 [HugePedia]
snp3D : Map Gene to Disease56124
BioCentury BCIQPCDHB12
ClinGenPCDHB12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56124
Chemical/Pharm GKB GenePA33028
Clinical trialPCDHB12
Miscellaneous
canSAR (ICR)PCDHB12 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHB12
EVEXPCDHB12
GoPubMedPCDHB12
iHOPPCDHB12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:43 CEST 2017

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