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PCDHB13 (protocadherin beta 13)

Identity

Alias_symbol (synonym)PCDH-BETA13
Other alias
HGNC (Hugo) PCDHB13
LocusID (NCBI) 56123
Atlas_Id 71723
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141213919 and ends at 141217421 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHB13   8684
Cards
Entrez_Gene (NCBI)PCDHB13  56123  protocadherin beta 13
AliasesPCDH-BETA13
GeneCards (Weizmann)PCDHB13
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:141213919-141217421 [Contig_View]  PCDHB13 [Vega]
TCGA cBioPortalPCDHB13
AceView (NCBI)PCDHB13
Genatlas (Paris)PCDHB13
WikiGenes56123
SOURCE (Princeton)PCDHB13
Genetics Home Reference (NIH)PCDHB13
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHB13  -     chr5:141213919-141217421 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHB13  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHB13 - 5q31.3 [CytoView hg19]  PCDHB13 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHB13 [Mapview hg19]  PCDHB13 [Mapview hg38]
OMIM606339   
Gene and transcription
Genbank (Entrez)AF152492 AF217745 AK021915 AK292821 AK296151
RefSeq transcript (Entrez)NM_018933
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHB13
Cluster EST : UnigeneHs.283803 [ NCBI ]
CGAP (NCI)Hs.283803
Gene ExpressionPCDHB13 [ NCBI-GEO ]   PCDHB13 [ EBI - ARRAY_EXPRESS ]   PCDHB13 [ SEEK ]   PCDHB13 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHB13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56123
GTEX Portal (Tissue expression)PCDHB13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5F0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5F0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5F0
Splice isoforms : SwissVarQ9Y5F0
PhosPhoSitePlusQ9Y5F0
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_C    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_C_2 (PF16492)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam16492   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHB13
DMDM Disease mutations56123
Blocks (Seattle)PCDHB13
SuperfamilyQ9Y5F0
Peptide AtlasQ9Y5F0
HPRD06957
IPIIPI00001449   IPI00939837   IPI00413955   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5F0
IntAct (EBI)Q9Y5F0
BioGRIDPCDHB13
STRING (EMBL)PCDHB13
ZODIACPCDHB13
Ontologies - Pathways
QuickGOQ9Y5F0
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  chemical synaptic transmission  synapse assembly  integral component of membrane  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  chemical synaptic transmission  synapse assembly  integral component of membrane  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  
NDEx NetworkPCDHB13
Atlas of Cancer Signalling NetworkPCDHB13
Wikipedia pathwaysPCDHB13
Orthology - Evolution
OrthoDB56123
Phylogenetic Trees/Animal Genes : TreeFamPCDHB13
HOVERGENQ9Y5F0
HOGENOMQ9Y5F0
Homologs : HomoloGenePCDHB13
Homology/Alignments : Family Browser (UCSC)PCDHB13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHB13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHB13
dbVarPCDHB13
ClinVarPCDHB13
1000_GenomesPCDHB13 
Exome Variant ServerPCDHB13
ExAC (Exome Aggregation Consortium)PCDHB13 (select the gene name)
Genetic variants : HAPMAP56123
Genomic Variants (DGV)PCDHB13 [DGVbeta]
DECIPHERPCDHB13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDHB13 
Mutations
ICGC Data PortalPCDHB13 
TCGA Data PortalPCDHB13 
Broad Tumor PortalPCDHB13
OASIS PortalPCDHB13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHB13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHB13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHB13
DgiDB (Drug Gene Interaction Database)PCDHB13
DoCM (Curated mutations)PCDHB13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHB13 (select a term)
intoGenPCDHB13
Cancer3DPCDHB13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606339   
Orphanet
MedgenPCDHB13
Genetic Testing Registry PCDHB13
NextProtQ9Y5F0 [Medical]
TSGene56123
GENETestsPCDHB13
Target ValidationPCDHB13
Huge Navigator PCDHB13 [HugePedia]
snp3D : Map Gene to Disease56123
BioCentury BCIQPCDHB13
ClinGenPCDHB13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56123
Chemical/Pharm GKB GenePA33029
Clinical trialPCDHB13
Miscellaneous
canSAR (ICR)PCDHB13 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHB13
EVEXPCDHB13
GoPubMedPCDHB13
iHOPPCDHB13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:05 CEST 2017

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