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PCDHB14 (protocadherin beta 14)

Identity

Alias_symbol (synonym)PCDH-BETA14
Other alias
HGNC (Hugo) PCDHB14
LocusID (NCBI) 56122
Atlas_Id 71724
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140601898 and ends at 140605860 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ANK2 (4q25) / PCDHB14 (5q31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHB14   8685
Cards
Entrez_Gene (NCBI)PCDHB14  56122  protocadherin beta 14
AliasesPCDH-BETA14
GeneCards (Weizmann)PCDHB14
Ensembl hg19 (Hinxton) [Gene_View]  chr5:140601898-140605860 [Contig_View]  PCDHB14 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:140601898-140605860 [Contig_View]  PCDHB14 [Vega]
TCGA cBioPortalPCDHB14
AceView (NCBI)PCDHB14
Genatlas (Paris)PCDHB14
WikiGenes56122
SOURCE (Princeton)PCDHB14
Genetics Home Reference (NIH)PCDHB14
Genomic and cartography
GoldenPath hg19 (UCSC)PCDHB14  -     chr5:140601898-140605860 +  5q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PCDHB14  -     5q31.3   [Description]    (hg38-Dec_2013)
EnsemblPCDHB14 - 5q31.3 [CytoView hg19]  PCDHB14 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHB14 [Mapview hg19]  PCDHB14 [Mapview hg38]
OMIM606340   
Gene and transcription
Genbank (Entrez)AF152493 AF217744 AI206913 AK074555 AK298296
RefSeq transcript (Entrez)NM_018934
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_000017 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)PCDHB14
Cluster EST : UnigeneHs.658497 [ NCBI ]
CGAP (NCI)Hs.658497
Gene ExpressionPCDHB14 [ NCBI-GEO ]   PCDHB14 [ EBI - ARRAY_EXPRESS ]   PCDHB14 [ SEEK ]   PCDHB14 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHB14 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56122
GTEX Portal (Tissue expression)PCDHB14
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5E9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5E9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5E9
Splice isoforms : SwissVarQ9Y5E9
PhosPhoSitePlusQ9Y5E9
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)   
Domain families : Pfam (NCBI)pfam00028    pfam08266   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHB14
DMDM Disease mutations56122
Blocks (Seattle)PCDHB14
SuperfamilyQ9Y5E9
Peptide AtlasQ9Y5E9
HPRD06958
IPIIPI00001434   IPI01010271   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5E9
IntAct (EBI)Q9Y5E9
BioGRIDPCDHB14
STRING (EMBL)PCDHB14
ZODIACPCDHB14
Ontologies - Pathways
QuickGOQ9Y5E9
Ontology : AmiGOcalcium ion binding  protein binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  synaptic transmission  synapse assembly  integral component of membrane  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  
Ontology : EGO-EBIcalcium ion binding  protein binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  synaptic transmission  synapse assembly  integral component of membrane  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  
NDEx NetworkPCDHB14
Atlas of Cancer Signalling NetworkPCDHB14
Wikipedia pathwaysPCDHB14
Orthology - Evolution
OrthoDB56122
Phylogenetic Trees/Animal Genes : TreeFamPCDHB14
HOVERGENQ9Y5E9
HOGENOMQ9Y5E9
Homologs : HomoloGenePCDHB14
Homology/Alignments : Family Browser (UCSC)PCDHB14
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHB14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHB14
dbVarPCDHB14
ClinVarPCDHB14
1000_GenomesPCDHB14 
Exome Variant ServerPCDHB14
ExAC (Exome Aggregation Consortium)PCDHB14 (select the gene name)
Genetic variants : HAPMAP56122
Genomic Variants (DGV)PCDHB14 [DGVbeta]
DECIPHER (Syndromes)5:140601898-140605860  
CONAN: Copy Number AnalysisPCDHB14 
Mutations
ICGC Data PortalPCDHB14 
TCGA Data PortalPCDHB14 
Broad Tumor PortalPCDHB14
OASIS PortalPCDHB14 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHB14  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHB14
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHB14
DgiDB (Drug Gene Interaction Database)PCDHB14
DoCM (Curated mutations)PCDHB14 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHB14 (select a term)
intoGenPCDHB14
Cancer3DPCDHB14(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606340   
Orphanet
MedgenPCDHB14
Genetic Testing Registry PCDHB14
NextProtQ9Y5E9 [Medical]
TSGene56122
GENETestsPCDHB14
Huge Navigator PCDHB14 [HugePedia]
snp3D : Map Gene to Disease56122
BioCentury BCIQPCDHB14
ClinGenPCDHB14
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56122
Chemical/Pharm GKB GenePA33030
Clinical trialPCDHB14
Miscellaneous
canSAR (ICR)PCDHB14 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHB14
EVEXPCDHB14
GoPubMedPCDHB14
iHOPPCDHB14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:38:00 CET 2017

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