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PCDHB15 (protocadherin beta 15)

Identity

Alias_symbol (synonym)PCDH-BETA15
Other alias
HGNC (Hugo) PCDHB15
LocusID (NCBI) 56121
Atlas_Id 71725
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141245349 and ends at 141248233 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHB15   8686
Cards
Entrez_Gene (NCBI)PCDHB15  56121  protocadherin beta 15
AliasesPCDH-BETA15
GeneCards (Weizmann)PCDHB15
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:141245349-141248233 [Contig_View]  PCDHB15 [Vega]
TCGA cBioPortalPCDHB15
AceView (NCBI)PCDHB15
Genatlas (Paris)PCDHB15
WikiGenes56121
SOURCE (Princeton)PCDHB15
Genetics Home Reference (NIH)PCDHB15
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHB15  -     chr5:141245349-141248233 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHB15  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHB15 - 5q31.3 [CytoView hg19]  PCDHB15 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHB15 [Mapview hg19]  PCDHB15 [Mapview hg38]
OMIM606341   
Gene and transcription
Genbank (Entrez)AF152494 AF217742 AI473490 AK312794 BC038797
RefSeq transcript (Entrez)NM_018935
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHB15
Cluster EST : UnigeneHs.130757 [ NCBI ]
CGAP (NCI)Hs.130757
Gene ExpressionPCDHB15 [ NCBI-GEO ]   PCDHB15 [ EBI - ARRAY_EXPRESS ]   PCDHB15 [ SEEK ]   PCDHB15 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHB15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56121
GTEX Portal (Tissue expression)PCDHB15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5E8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5E8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5E8
Splice isoforms : SwissVarQ9Y5E8
PhosPhoSitePlusQ9Y5E8
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_C    Cadherin_CS    Cadherin_N    PCDHB15   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_C_2 (PF16492)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam16492   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHB15
DMDM Disease mutations56121
Blocks (Seattle)PCDHB15
SuperfamilyQ9Y5E8
Peptide AtlasQ9Y5E8
HPRD06959
IPIIPI00001433   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5E8
IntAct (EBI)Q9Y5E8
BioGRIDPCDHB15
STRING (EMBL)PCDHB15
ZODIACPCDHB15
Ontologies - Pathways
QuickGOQ9Y5E8
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  chemical synaptic transmission  nervous system development  synapse assembly  photoreceptor connecting cilium  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  chemical synaptic transmission  nervous system development  synapse assembly  photoreceptor connecting cilium  
NDEx NetworkPCDHB15
Atlas of Cancer Signalling NetworkPCDHB15
Wikipedia pathwaysPCDHB15
Orthology - Evolution
OrthoDB56121
Phylogenetic Trees/Animal Genes : TreeFamPCDHB15
HOVERGENQ9Y5E8
HOGENOMQ9Y5E8
Homologs : HomoloGenePCDHB15
Homology/Alignments : Family Browser (UCSC)PCDHB15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHB15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHB15
dbVarPCDHB15
ClinVarPCDHB15
1000_GenomesPCDHB15 
Exome Variant ServerPCDHB15
ExAC (Exome Aggregation Consortium)PCDHB15 (select the gene name)
Genetic variants : HAPMAP56121
Genomic Variants (DGV)PCDHB15 [DGVbeta]
DECIPHERPCDHB15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDHB15 
Mutations
ICGC Data PortalPCDHB15 
TCGA Data PortalPCDHB15 
Broad Tumor PortalPCDHB15
OASIS PortalPCDHB15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHB15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHB15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHB15
DgiDB (Drug Gene Interaction Database)PCDHB15
DoCM (Curated mutations)PCDHB15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHB15 (select a term)
intoGenPCDHB15
Cancer3DPCDHB15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606341   
Orphanet
MedgenPCDHB15
Genetic Testing Registry PCDHB15
NextProtQ9Y5E8 [Medical]
TSGene56121
GENETestsPCDHB15
Target ValidationPCDHB15
Huge Navigator PCDHB15 [HugePedia]
snp3D : Map Gene to Disease56121
BioCentury BCIQPCDHB15
ClinGenPCDHB15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56121
Chemical/Pharm GKB GenePA33031
Clinical trialPCDHB15
Miscellaneous
canSAR (ICR)PCDHB15 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHB15
EVEXPCDHB15
GoPubMedPCDHB15
iHOPPCDHB15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:43 CEST 2017

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