Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PCDHB17P (protocadherin beta 17 pseudogene)

Identity

Alias_namesPCDHB17
Alias_symbol (synonym)PCDH-psi1
Other aliasME4
HGNC (Hugo) PCDHB17P
LocusID (NCBI) 54661
Atlas_Id 76614
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141155999 and ends at 141158409 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHB17P   14547
Cards
Entrez_Gene (NCBI)PCDHB17P  54661  protocadherin beta 17 pseudogene
AliasesME4; PCDH-psi1; PCDHB17
GeneCards (Weizmann)PCDHB17P
Ensembl hg19 (Hinxton)ENSG00000255622 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255622 [Gene_View]  chr5:141155999-141158409 [Contig_View]  PCDHB17P [Vega]
ICGC DataPortalENSG00000255622
TCGA cBioPortalPCDHB17P
AceView (NCBI)PCDHB17P
Genatlas (Paris)PCDHB17P
WikiGenes54661
SOURCE (Princeton)PCDHB17P
Genetics Home Reference (NIH)PCDHB17P
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHB17P  -     chr5:141155999-141158409 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHB17P  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHB17P - 5q31.3 [CytoView hg19]  PCDHB17P - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHB17P [Mapview hg19]  PCDHB17P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF152527 AF217751 AK293436 D88797
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHB17P
Cluster EST : UnigeneHs.284307 [ NCBI ]
CGAP (NCI)Hs.284307
Alternative Splicing GalleryENSG00000255622
Gene ExpressionPCDHB17P [ NCBI-GEO ]   PCDHB17P [ EBI - ARRAY_EXPRESS ]   PCDHB17P [ SEEK ]   PCDHB17P [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHB17P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)54661
GTEX Portal (Tissue expression)PCDHB17P
Human Protein AtlasENSG00000255622-PCDHB17P [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PCDHB17P
DMDM Disease mutations54661
Blocks (Seattle)PCDHB17P
Human Protein Atlas [tissue]ENSG00000255622-PCDHB17P [tissue]
IPIIPI00045942   
Protein Interaction databases
FunCoupENSG00000255622
BioGRIDPCDHB17P
STRING (EMBL)PCDHB17P
ZODIACPCDHB17P
Ontologies - Pathways
Huge Navigator PCDHB17P [HugePedia]
snp3D : Map Gene to Disease54661
BioCentury BCIQPCDHB17P
ClinGenPCDHB17P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54661
Chemical/Pharm GKB GenePA33033
Clinical trialPCDHB17P
Miscellaneous
canSAR (ICR)PCDHB17P (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHB17P
EVEXPCDHB17P
GoPubMedPCDHB17P
iHOPPCDHB17P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:12:44 CET 2017

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