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PCDHB18P (protocadherin beta 18 pseudogene)

Identity

Alias_namesPCDHB18
Alias_symbol (synonym)PCDH-psi2
Other alias
HGNC (Hugo) PCDHB18P
LocusID (NCBI) 54660
Atlas_Id 77704
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141234333 and ends at 141237529 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHB18P   14548
Cards
Entrez_Gene (NCBI)PCDHB18P  54660  protocadherin beta 18 pseudogene
AliasesPCDH-psi2; PCDHB18
GeneCards (Weizmann)PCDHB18P
Ensembl hg19 (Hinxton)ENSG00000146001 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146001 [Gene_View]  chr5:141234333-141237529 [Contig_View]  PCDHB18P [Vega]
ICGC DataPortalENSG00000146001
TCGA cBioPortalPCDHB18P
AceView (NCBI)PCDHB18P
Genatlas (Paris)PCDHB18P
WikiGenes54660
SOURCE (Princeton)PCDHB18P
Genetics Home Reference (NIH)PCDHB18P
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHB18P  -     chr5:141234333-141237529 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHB18P  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHB18P - 5q31.3 [CytoView hg19]  PCDHB18P - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHB18P [Mapview hg19]  PCDHB18P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF152528 AF217743 AK095496 DA121078
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHB18P
Cluster EST : UnigeneHs.676071 [ NCBI ]
CGAP (NCI)Hs.676071
Alternative Splicing GalleryENSG00000146001
Gene ExpressionPCDHB18P [ NCBI-GEO ]   PCDHB18P [ EBI - ARRAY_EXPRESS ]   PCDHB18P [ SEEK ]   PCDHB18P [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHB18P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54660
GTEX Portal (Tissue expression)PCDHB18P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96TA0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96TA0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96TA0
Splice isoforms : SwissVarQ96TA0
PhosPhoSitePlusQ96TA0
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_C    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_C_2 (PF16492)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam16492   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHB18P
DMDM Disease mutations54660
Blocks (Seattle)PCDHB18P
SuperfamilyQ96TA0
Human Protein AtlasENSG00000146001
Peptide AtlasQ96TA0
IPIIPI00045945   
Protein Interaction databases
DIP (DOE-UCLA)Q96TA0
IntAct (EBI)Q96TA0
FunCoupENSG00000146001
BioGRIDPCDHB18P
STRING (EMBL)PCDHB18P
ZODIACPCDHB18P
Ontologies - Pathways
QuickGOQ96TA0
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  chemical synaptic transmission  synapse assembly  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  chemical synaptic transmission  synapse assembly  
NDEx NetworkPCDHB18P
Atlas of Cancer Signalling NetworkPCDHB18P
Wikipedia pathwaysPCDHB18P
Orthology - Evolution
OrthoDB54660
GeneTree (enSembl)ENSG00000146001
Phylogenetic Trees/Animal Genes : TreeFamPCDHB18P
HOVERGENQ96TA0
HOGENOMQ96TA0
Homologs : HomoloGenePCDHB18P
Homology/Alignments : Family Browser (UCSC)PCDHB18P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHB18P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHB18P
dbVarPCDHB18P
ClinVarPCDHB18P
1000_GenomesPCDHB18P 
Exome Variant ServerPCDHB18P
ExAC (Exome Aggregation Consortium)PCDHB18P (select the gene name)
Genetic variants : HAPMAP54660
Genomic Variants (DGV)PCDHB18P [DGVbeta]
DECIPHERPCDHB18P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDHB18P 
Mutations
ICGC Data PortalPCDHB18P 
TCGA Data PortalPCDHB18P 
Broad Tumor PortalPCDHB18P
OASIS PortalPCDHB18P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPCDHB18P
BioMutasearch PCDHB18P
DgiDB (Drug Gene Interaction Database)PCDHB18P
DoCM (Curated mutations)PCDHB18P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHB18P (select a term)
intoGenPCDHB18P
Cancer3DPCDHB18P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPCDHB18P
Genetic Testing Registry PCDHB18P
NextProtQ96TA0 [Medical]
TSGene54660
GENETestsPCDHB18P
Target ValidationPCDHB18P
Huge Navigator PCDHB18P [HugePedia]
snp3D : Map Gene to Disease54660
BioCentury BCIQPCDHB18P
ClinGenPCDHB18P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54660
Chemical/Pharm GKB GenePA33034
Clinical trialPCDHB18P
Miscellaneous
canSAR (ICR)PCDHB18P (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHB18P
EVEXPCDHB18P
GoPubMedPCDHB18P
iHOPPCDHB18P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:05 CEST 2017

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