Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PCDHB19P (protocadherin beta 19 pseudogene)

Identity

Alias_symbol (synonym)PCDH-PSI5
Other aliasPCDHB19
HGNC (Hugo) PCDHB19P
LocusID (NCBI) 84054
Atlas_Id 71729
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141240121 and ends at 141244744 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PCDHB19P (5q31.3) / H2AFY (5q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PCDHB19P   14549
Cards
Entrez_Gene (NCBI)PCDHB19P  84054  protocadherin beta 19 pseudogene
AliasesPCDH-PSI5; PCDHB19
GeneCards (Weizmann)PCDHB19P
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr5:141240121-141244744 [Contig_View]  PCDHB19P [Vega]
TCGA cBioPortalPCDHB19P
AceView (NCBI)PCDHB19P
Genatlas (Paris)PCDHB19P
WikiGenes84054
SOURCE (Princeton)PCDHB19P
Genetics Home Reference (NIH)PCDHB19P
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHB19P  -     chr5:141240121-141244744 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHB19P  -     5q31.3   [Description]    (hg19-Feb_2009)
GoldenPathPCDHB19P - 5q31.3 [CytoView hg19]  PCDHB19P - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHB19P [Mapview hg19]  PCDHB19P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF329369
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHB19P
Cluster EST : UnigeneHs.731335 [ NCBI ]
CGAP (NCI)Hs.731335
Gene ExpressionPCDHB19P [ NCBI-GEO ]   PCDHB19P [ EBI - ARRAY_EXPRESS ]   PCDHB19P [ SEEK ]   PCDHB19P [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHB19P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)84054
GTEX Portal (Tissue expression)PCDHB19P
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PCDHB19P
DMDM Disease mutations84054
Blocks (Seattle)PCDHB19P
Protein Interaction databases
BioGRIDPCDHB19P
STRING (EMBL)PCDHB19P
ZODIACPCDHB19P
Ontologies - Pathways
Huge Navigator PCDHB19P [HugePedia]
snp3D : Map Gene to Disease84054
BioCentury BCIQPCDHB19P
ClinGenPCDHB19P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84054
Chemical/Pharm GKB GenePA33035
Clinical trialPCDHB19P
Miscellaneous
canSAR (ICR)PCDHB19P (select the gene name)
DataMed IndexPCDHB19P
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHB19P
EVEXPCDHB19P
GoPubMedPCDHB19P
iHOPPCDHB19P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 7 17:42:34 CEST 2019
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.