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PCDHB2 (protocadherin beta 2)

Identity

Alias_symbol (synonym)PCDH-BETA2
Other alias
HGNC (Hugo) PCDHB2
LocusID (NCBI) 56133
Atlas_Id 71730
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140474191 and ends at 140476964 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHB2   8687
Cards
Entrez_Gene (NCBI)PCDHB2  56133  protocadherin beta 2
AliasesPCDH-BETA2
GeneCards (Weizmann)PCDHB2
Ensembl hg19 (Hinxton) [Gene_View]  chr5:140474191-140476964 [Contig_View]  PCDHB2 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:140474191-140476964 [Contig_View]  PCDHB2 [Vega]
TCGA cBioPortalPCDHB2
AceView (NCBI)PCDHB2
Genatlas (Paris)PCDHB2
WikiGenes56133
SOURCE (Princeton)PCDHB2
Genetics Home Reference (NIH)PCDHB2
Genomic and cartography
GoldenPath hg19 (UCSC)PCDHB2  -     chr5:140474191-140476964 +  5q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PCDHB2  -     5q31.3   [Description]    (hg38-Dec_2013)
EnsemblPCDHB2 - 5q31.3 [CytoView hg19]  PCDHB2 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHB2 [Mapview hg19]  PCDHB2 [Mapview hg38]
OMIM606328   
Gene and transcription
Genbank (Entrez)AB209745 AF152495 AF217756 AK027526 AK314642
RefSeq transcript (Entrez)NM_018936
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_000017 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)PCDHB2
Cluster EST : UnigeneHs.533023 [ NCBI ]
CGAP (NCI)Hs.533023
Gene ExpressionPCDHB2 [ NCBI-GEO ]   PCDHB2 [ EBI - ARRAY_EXPRESS ]   PCDHB2 [ SEEK ]   PCDHB2 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHB2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56133
GTEX Portal (Tissue expression)PCDHB2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5E7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5E7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5E7
Splice isoforms : SwissVarQ9Y5E7
PhosPhoSitePlusQ9Y5E7
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_N    PCDHB2   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)   
Domain families : Pfam (NCBI)pfam00028    pfam08266   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHB2
DMDM Disease mutations56133
Blocks (Seattle)PCDHB2
SuperfamilyQ9Y5E7
Peptide AtlasQ9Y5E7
HPRD07558
IPIIPI00001432   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5E7
IntAct (EBI)Q9Y5E7
BioGRIDPCDHB2
STRING (EMBL)PCDHB2
ZODIACPCDHB2
Ontologies - Pathways
QuickGOQ9Y5E7
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  synaptic transmission  nervous system development  synapse assembly  integral component of membrane  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  synaptic transmission  nervous system development  synapse assembly  integral component of membrane  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  
NDEx NetworkPCDHB2
Atlas of Cancer Signalling NetworkPCDHB2
Wikipedia pathwaysPCDHB2
Orthology - Evolution
OrthoDB56133
Phylogenetic Trees/Animal Genes : TreeFamPCDHB2
HOVERGENQ9Y5E7
HOGENOMQ9Y5E7
Homologs : HomoloGenePCDHB2
Homology/Alignments : Family Browser (UCSC)PCDHB2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHB2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHB2
dbVarPCDHB2
ClinVarPCDHB2
1000_GenomesPCDHB2 
Exome Variant ServerPCDHB2
ExAC (Exome Aggregation Consortium)PCDHB2 (select the gene name)
Genetic variants : HAPMAP56133
Genomic Variants (DGV)PCDHB2 [DGVbeta]
DECIPHER (Syndromes)5:140474191-140476964  
CONAN: Copy Number AnalysisPCDHB2 
Mutations
ICGC Data PortalPCDHB2 
TCGA Data PortalPCDHB2 
Broad Tumor PortalPCDHB2
OASIS PortalPCDHB2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHB2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHB2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHB2
DgiDB (Drug Gene Interaction Database)PCDHB2
DoCM (Curated mutations)PCDHB2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHB2 (select a term)
intoGenPCDHB2
Cancer3DPCDHB2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606328   
Orphanet
MedgenPCDHB2
Genetic Testing Registry PCDHB2
NextProtQ9Y5E7 [Medical]
TSGene56133
GENETestsPCDHB2
Huge Navigator PCDHB2 [HugePedia]
snp3D : Map Gene to Disease56133
BioCentury BCIQPCDHB2
ClinGenPCDHB2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56133
Chemical/Pharm GKB GenePA33036
Clinical trialPCDHB2
Miscellaneous
canSAR (ICR)PCDHB2 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHB2
EVEXPCDHB2
GoPubMedPCDHB2
iHOPPCDHB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:38:01 CET 2017

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