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PCDHB3 (protocadherin beta 3)

Identity

Alias_symbol (synonym)PCDH-BETA3
Other alias
HGNC (Hugo) PCDHB3
LocusID (NCBI) 56132
Atlas_Id 71731
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141100242 and ends at 141103823 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHB3   8688
Cards
Entrez_Gene (NCBI)PCDHB3  56132  protocadherin beta 3
AliasesPCDH-BETA3
GeneCards (Weizmann)PCDHB3
Ensembl hg19 (Hinxton)ENSG00000113205 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000113205 [Gene_View]  chr5:141100242-141103823 [Contig_View]  PCDHB3 [Vega]
ICGC DataPortalENSG00000113205
TCGA cBioPortalPCDHB3
AceView (NCBI)PCDHB3
Genatlas (Paris)PCDHB3
WikiGenes56132
SOURCE (Princeton)PCDHB3
Genetics Home Reference (NIH)PCDHB3
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHB3  -     chr5:141100242-141103823 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHB3  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHB3 - 5q31.3 [CytoView hg19]  PCDHB3 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHB3 [Mapview hg19]  PCDHB3 [Mapview hg38]
OMIM606329   
Gene and transcription
Genbank (Entrez)AF152496 AF217755 AI015509 AK313451 BC104817
RefSeq transcript (Entrez)NM_018937
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHB3
Cluster EST : UnigeneHs.708778 [ NCBI ]
CGAP (NCI)Hs.708778
Alternative Splicing GalleryENSG00000113205
Gene ExpressionPCDHB3 [ NCBI-GEO ]   PCDHB3 [ EBI - ARRAY_EXPRESS ]   PCDHB3 [ SEEK ]   PCDHB3 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHB3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56132
GTEX Portal (Tissue expression)PCDHB3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5E6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5E6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5E6
Splice isoforms : SwissVarQ9Y5E6
PhosPhoSitePlusQ9Y5E6
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_C    Cadherin_CS    Cadherin_N    PCDHB2/3   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_C_2 (PF16492)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam16492   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHB3
DMDM Disease mutations56132
Blocks (Seattle)PCDHB3
SuperfamilyQ9Y5E6
Human Protein AtlasENSG00000113205
Peptide AtlasQ9Y5E6
HPRD08398
IPIIPI00001431   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5E6
IntAct (EBI)Q9Y5E6
FunCoupENSG00000113205
BioGRIDPCDHB3
STRING (EMBL)PCDHB3
ZODIACPCDHB3
Ontologies - Pathways
QuickGOQ9Y5E6
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  chemical synaptic transmission  nervous system development  synapse assembly  integral component of membrane  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  chemical synaptic transmission  nervous system development  synapse assembly  integral component of membrane  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  
NDEx NetworkPCDHB3
Atlas of Cancer Signalling NetworkPCDHB3
Wikipedia pathwaysPCDHB3
Orthology - Evolution
OrthoDB56132
GeneTree (enSembl)ENSG00000113205
Phylogenetic Trees/Animal Genes : TreeFamPCDHB3
HOVERGENQ9Y5E6
HOGENOMQ9Y5E6
Homologs : HomoloGenePCDHB3
Homology/Alignments : Family Browser (UCSC)PCDHB3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHB3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHB3
dbVarPCDHB3
ClinVarPCDHB3
1000_GenomesPCDHB3 
Exome Variant ServerPCDHB3
ExAC (Exome Aggregation Consortium)PCDHB3 (select the gene name)
Genetic variants : HAPMAP56132
Genomic Variants (DGV)PCDHB3 [DGVbeta]
DECIPHERPCDHB3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDHB3 
Mutations
ICGC Data PortalPCDHB3 
TCGA Data PortalPCDHB3 
Broad Tumor PortalPCDHB3
OASIS PortalPCDHB3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHB3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHB3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHB3
DgiDB (Drug Gene Interaction Database)PCDHB3
DoCM (Curated mutations)PCDHB3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHB3 (select a term)
intoGenPCDHB3
Cancer3DPCDHB3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606329   
Orphanet
MedgenPCDHB3
Genetic Testing Registry PCDHB3
NextProtQ9Y5E6 [Medical]
TSGene56132
GENETestsPCDHB3
Target ValidationPCDHB3
Huge Navigator PCDHB3 [HugePedia]
snp3D : Map Gene to Disease56132
BioCentury BCIQPCDHB3
ClinGenPCDHB3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56132
Chemical/Pharm GKB GenePA33037
Clinical trialPCDHB3
Miscellaneous
canSAR (ICR)PCDHB3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHB3
EVEXPCDHB3
GoPubMedPCDHB3
iHOPPCDHB3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:06 CEST 2017

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