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PCDHB4 (protocadherin beta 4)

Identity

Alias_symbol (synonym)PCDH-BETA4
Other alias
HGNC (Hugo) PCDHB4
LocusID (NCBI) 56131
Atlas_Id 71732
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140501332 and ends at 140505203 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PCDHB4 (5q31.3) / PCDHB4 (5q31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHB4   8689
Cards
Entrez_Gene (NCBI)PCDHB4  56131  protocadherin beta 4
AliasesPCDH-BETA4
GeneCards (Weizmann)PCDHB4
Ensembl hg19 (Hinxton)ENSG00000081818 [Gene_View]  chr5:140501332-140505203 [Contig_View]  PCDHB4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000081818 [Gene_View]  chr5:140501332-140505203 [Contig_View]  PCDHB4 [Vega]
ICGC DataPortalENSG00000081818
TCGA cBioPortalPCDHB4
AceView (NCBI)PCDHB4
Genatlas (Paris)PCDHB4
WikiGenes56131
SOURCE (Princeton)PCDHB4
Genetics Home Reference (NIH)PCDHB4
Genomic and cartography
GoldenPath hg19 (UCSC)PCDHB4  -     chr5:140501332-140505203 +  5q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PCDHB4  -     5q31.3   [Description]    (hg38-Dec_2013)
EnsemblPCDHB4 - 5q31.3 [CytoView hg19]  PCDHB4 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHB4 [Mapview hg19]  PCDHB4 [Mapview hg38]
OMIM606330   
Gene and transcription
Genbank (Entrez)AF152497 AF217754 AK313640 AW135510 BC098139
RefSeq transcript (Entrez)NM_018938
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_000017 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)PCDHB4
Cluster EST : UnigeneHs.591250 [ NCBI ]
CGAP (NCI)Hs.591250
Alternative Splicing GalleryENSG00000081818
Gene ExpressionPCDHB4 [ NCBI-GEO ]   PCDHB4 [ EBI - ARRAY_EXPRESS ]   PCDHB4 [ SEEK ]   PCDHB4 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHB4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56131
GTEX Portal (Tissue expression)PCDHB4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5E5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5E5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5E5
Splice isoforms : SwissVarQ9Y5E5
PhosPhoSitePlusQ9Y5E5
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_N    PCDHB4   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)   
Domain families : Pfam (NCBI)pfam00028    pfam08266   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHB4
DMDM Disease mutations56131
Blocks (Seattle)PCDHB4
SuperfamilyQ9Y5E5
Human Protein AtlasENSG00000081818
Peptide AtlasQ9Y5E5
HPRD07559
IPIIPI00001429   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5E5
IntAct (EBI)Q9Y5E5
FunCoupENSG00000081818
BioGRIDPCDHB4
STRING (EMBL)PCDHB4
ZODIACPCDHB4
Ontologies - Pathways
QuickGOQ9Y5E5
Ontology : AmiGOcalcium ion binding  cytoplasm  plasma membrane  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  synaptic transmission  nervous system development  synapse assembly  integral component of membrane  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  intermediate filament cytoskeleton  
Ontology : EGO-EBIcalcium ion binding  cytoplasm  plasma membrane  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  synaptic transmission  nervous system development  synapse assembly  integral component of membrane  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  intermediate filament cytoskeleton  
NDEx NetworkPCDHB4
Atlas of Cancer Signalling NetworkPCDHB4
Wikipedia pathwaysPCDHB4
Orthology - Evolution
OrthoDB56131
GeneTree (enSembl)ENSG00000081818
Phylogenetic Trees/Animal Genes : TreeFamPCDHB4
HOVERGENQ9Y5E5
HOGENOMQ9Y5E5
Homologs : HomoloGenePCDHB4
Homology/Alignments : Family Browser (UCSC)PCDHB4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHB4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHB4
dbVarPCDHB4
ClinVarPCDHB4
1000_GenomesPCDHB4 
Exome Variant ServerPCDHB4
ExAC (Exome Aggregation Consortium)PCDHB4 (select the gene name)
Genetic variants : HAPMAP56131
Genomic Variants (DGV)PCDHB4 [DGVbeta]
DECIPHER (Syndromes)5:140501332-140505203  ENSG00000081818
CONAN: Copy Number AnalysisPCDHB4 
Mutations
ICGC Data PortalPCDHB4 
TCGA Data PortalPCDHB4 
Broad Tumor PortalPCDHB4
OASIS PortalPCDHB4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHB4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHB4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHB4
DgiDB (Drug Gene Interaction Database)PCDHB4
DoCM (Curated mutations)PCDHB4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHB4 (select a term)
intoGenPCDHB4
Cancer3DPCDHB4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606330   
Orphanet
MedgenPCDHB4
Genetic Testing Registry PCDHB4
NextProtQ9Y5E5 [Medical]
TSGene56131
GENETestsPCDHB4
Huge Navigator PCDHB4 [HugePedia]
snp3D : Map Gene to Disease56131
BioCentury BCIQPCDHB4
ClinGenPCDHB4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56131
Chemical/Pharm GKB GenePA33038
Clinical trialPCDHB4
Miscellaneous
canSAR (ICR)PCDHB4 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHB4
EVEXPCDHB4
GoPubMedPCDHB4
iHOPPCDHB4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:38:01 CET 2017

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