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PCDHB6 (protocadherin beta 6)

Identity

Alias_symbol (synonym)PCDH-BETA6
Other alias
HGNC (Hugo) PCDHB6
LocusID (NCBI) 56130
Atlas_Id 71734
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141150022 and ends at 141153287 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHB6   8691
Cards
Entrez_Gene (NCBI)PCDHB6  56130  protocadherin beta 6
AliasesPCDH-BETA6
GeneCards (Weizmann)PCDHB6
Ensembl hg19 (Hinxton)ENSG00000113211 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000113211 [Gene_View]  chr5:141150022-141153287 [Contig_View]  PCDHB6 [Vega]
ICGC DataPortalENSG00000113211
TCGA cBioPortalPCDHB6
AceView (NCBI)PCDHB6
Genatlas (Paris)PCDHB6
WikiGenes56130
SOURCE (Princeton)PCDHB6
Genetics Home Reference (NIH)PCDHB6
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHB6  -     chr5:141150022-141153287 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHB6  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHB6 - 5q31.3 [CytoView hg19]  PCDHB6 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHB6 [Mapview hg19]  PCDHB6 [Mapview hg38]
OMIM606332   
Gene and transcription
Genbank (Entrez)AF152499 AF217752 AK299661 AK313482 BC148406
RefSeq transcript (Entrez)NM_001303145 NM_018939
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHB6
Cluster EST : UnigeneHs.283085 [ NCBI ]
CGAP (NCI)Hs.283085
Alternative Splicing GalleryENSG00000113211
Gene ExpressionPCDHB6 [ NCBI-GEO ]   PCDHB6 [ EBI - ARRAY_EXPRESS ]   PCDHB6 [ SEEK ]   PCDHB6 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHB6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56130
GTEX Portal (Tissue expression)PCDHB6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5E3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5E3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5E3
Splice isoforms : SwissVarQ9Y5E3
PhosPhoSitePlusQ9Y5E3
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_C    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_C_2 (PF16492)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam16492   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHB6
DMDM Disease mutations56130
Blocks (Seattle)PCDHB6
SuperfamilyQ9Y5E3
Human Protein AtlasENSG00000113211
Peptide AtlasQ9Y5E3
HPRD07561
IPIIPI00001426   IPI01009948   IPI01009462   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5E3
IntAct (EBI)Q9Y5E3
FunCoupENSG00000113211
BioGRIDPCDHB6
STRING (EMBL)PCDHB6
ZODIACPCDHB6
Ontologies - Pathways
QuickGOQ9Y5E3
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  chemical synaptic transmission  nervous system development  synapse assembly  cell-cell recognition  integral component of membrane  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  identical protein binding  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  chemical synaptic transmission  nervous system development  synapse assembly  cell-cell recognition  integral component of membrane  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  identical protein binding  
NDEx NetworkPCDHB6
Atlas of Cancer Signalling NetworkPCDHB6
Wikipedia pathwaysPCDHB6
Orthology - Evolution
OrthoDB56130
GeneTree (enSembl)ENSG00000113211
Phylogenetic Trees/Animal Genes : TreeFamPCDHB6
HOVERGENQ9Y5E3
HOGENOMQ9Y5E3
Homologs : HomoloGenePCDHB6
Homology/Alignments : Family Browser (UCSC)PCDHB6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHB6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHB6
dbVarPCDHB6
ClinVarPCDHB6
1000_GenomesPCDHB6 
Exome Variant ServerPCDHB6
ExAC (Exome Aggregation Consortium)PCDHB6 (select the gene name)
Genetic variants : HAPMAP56130
Genomic Variants (DGV)PCDHB6 [DGVbeta]
DECIPHERPCDHB6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDHB6 
Mutations
ICGC Data PortalPCDHB6 
TCGA Data PortalPCDHB6 
Broad Tumor PortalPCDHB6
OASIS PortalPCDHB6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHB6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHB6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHB6
DgiDB (Drug Gene Interaction Database)PCDHB6
DoCM (Curated mutations)PCDHB6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHB6 (select a term)
intoGenPCDHB6
Cancer3DPCDHB6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606332   
Orphanet
MedgenPCDHB6
Genetic Testing Registry PCDHB6
NextProtQ9Y5E3 [Medical]
TSGene56130
GENETestsPCDHB6
Target ValidationPCDHB6
Huge Navigator PCDHB6 [HugePedia]
snp3D : Map Gene to Disease56130
BioCentury BCIQPCDHB6
ClinGenPCDHB6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56130
Chemical/Pharm GKB GenePA33040
Clinical trialPCDHB6
Miscellaneous
canSAR (ICR)PCDHB6 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHB6
EVEXPCDHB6
GoPubMedPCDHB6
iHOPPCDHB6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:45 CEST 2017

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