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PCDHB7 (protocadherin beta 7)

Identity

Alias_symbol (synonym)PCDH-BETA7
Other alias
HGNC (Hugo) PCDHB7
LocusID (NCBI) 56129
Atlas_Id 71735
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141172621 and ends at 141176376 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHB7   8692
Cards
Entrez_Gene (NCBI)PCDHB7  56129  protocadherin beta 7
AliasesPCDH-BETA7
GeneCards (Weizmann)PCDHB7
Ensembl hg19 (Hinxton)ENSG00000113212 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000113212 [Gene_View]  chr5:141172621-141176376 [Contig_View]  PCDHB7 [Vega]
ICGC DataPortalENSG00000113212
TCGA cBioPortalPCDHB7
AceView (NCBI)PCDHB7
Genatlas (Paris)PCDHB7
WikiGenes56129
SOURCE (Princeton)PCDHB7
Genetics Home Reference (NIH)PCDHB7
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHB7  -     chr5:141172621-141176376 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHB7  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHB7 - 5q31.3 [CytoView hg19]  PCDHB7 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHB7 [Mapview hg19]  PCDHB7 [Mapview hg38]
OMIM606333   
Gene and transcription
Genbank (Entrez)AF152500 AF217750 AK024641 AK222560 AK222678
RefSeq transcript (Entrez)NM_018940
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHB7
Cluster EST : UnigeneHs.203830 [ NCBI ]
CGAP (NCI)Hs.203830
Alternative Splicing GalleryENSG00000113212
Gene ExpressionPCDHB7 [ NCBI-GEO ]   PCDHB7 [ EBI - ARRAY_EXPRESS ]   PCDHB7 [ SEEK ]   PCDHB7 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHB7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56129
GTEX Portal (Tissue expression)PCDHB7
Human Protein AtlasENSG00000113212-PCDHB7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5E2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5E2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5E2
Splice isoforms : SwissVarQ9Y5E2
PhosPhoSitePlusQ9Y5E2
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_C    Cadherin_CS    Cadherin_N    PCDHB7   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_C_2 (PF16492)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam16492   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHB7
DMDM Disease mutations56129
Blocks (Seattle)PCDHB7
SuperfamilyQ9Y5E2
Human Protein Atlas [tissue]ENSG00000113212-PCDHB7 [tissue]
Peptide AtlasQ9Y5E2
HPRD07562
IPIIPI00001425   IPI01014889   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5E2
IntAct (EBI)Q9Y5E2
FunCoupENSG00000113212
BioGRIDPCDHB7
STRING (EMBL)PCDHB7
ZODIACPCDHB7
Ontologies - Pathways
QuickGOQ9Y5E2
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  chemical synaptic transmission  synapse assembly  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  chemical synaptic transmission  synapse assembly  
NDEx NetworkPCDHB7
Atlas of Cancer Signalling NetworkPCDHB7
Wikipedia pathwaysPCDHB7
Orthology - Evolution
OrthoDB56129
GeneTree (enSembl)ENSG00000113212
Phylogenetic Trees/Animal Genes : TreeFamPCDHB7
HOVERGENQ9Y5E2
HOGENOMQ9Y5E2
Homologs : HomoloGenePCDHB7
Homology/Alignments : Family Browser (UCSC)PCDHB7
Gene fusions - Rearrangements
Fusion: Tumor Portal PCDHB7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHB7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHB7
dbVarPCDHB7
ClinVarPCDHB7
1000_GenomesPCDHB7 
Exome Variant ServerPCDHB7
ExAC (Exome Aggregation Consortium)ENSG00000113212
GNOMAD BrowserENSG00000113212
Genetic variants : HAPMAP56129
Genomic Variants (DGV)PCDHB7 [DGVbeta]
DECIPHERPCDHB7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDHB7 
Mutations
ICGC Data PortalPCDHB7 
TCGA Data PortalPCDHB7 
Broad Tumor PortalPCDHB7
OASIS PortalPCDHB7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHB7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHB7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHB7
DgiDB (Drug Gene Interaction Database)PCDHB7
DoCM (Curated mutations)PCDHB7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHB7 (select a term)
intoGenPCDHB7
Cancer3DPCDHB7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606333   
Orphanet
MedgenPCDHB7
Genetic Testing Registry PCDHB7
NextProtQ9Y5E2 [Medical]
TSGene56129
GENETestsPCDHB7
Target ValidationPCDHB7
Huge Navigator PCDHB7 [HugePedia]
snp3D : Map Gene to Disease56129
BioCentury BCIQPCDHB7
ClinGenPCDHB7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56129
Chemical/Pharm GKB GenePA33041
Clinical trialPCDHB7
Miscellaneous
canSAR (ICR)PCDHB7 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHB7
EVEXPCDHB7
GoPubMedPCDHB7
iHOPPCDHB7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:21:57 CET 2017

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