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PCDHB8 (protocadherin beta 8)

Identity

Alias_symbol (synonym)PCDH-BETA8
PCDH3I
Other alias
HGNC (Hugo) PCDHB8
LocusID (NCBI) 56128
Atlas_Id 71736
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141177790 and ends at 141180500 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHB8   8693
Cards
Entrez_Gene (NCBI)PCDHB8  56128  protocadherin beta 8
AliasesPCDH-BETA8; PCDH3I
GeneCards (Weizmann)PCDHB8
Ensembl hg19 (Hinxton)ENSG00000120322 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120322 [Gene_View]  chr5:141177790-141180500 [Contig_View]  PCDHB8 [Vega]
ICGC DataPortalENSG00000120322
TCGA cBioPortalPCDHB8
AceView (NCBI)PCDHB8
Genatlas (Paris)PCDHB8
WikiGenes56128
SOURCE (Princeton)PCDHB8
Genetics Home Reference (NIH)PCDHB8
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHB8  -     chr5:141177790-141180500 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHB8  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHB8 - 5q31.3 [CytoView hg19]  PCDHB8 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHB8 [Mapview hg19]  PCDHB8 [Mapview hg38]
OMIM606334   
Gene and transcription
Genbank (Entrez)AF152501 AU119840 BC136801
RefSeq transcript (Entrez)NM_019120
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHB8
Cluster EST : UnigeneHs.287793 [ NCBI ]
CGAP (NCI)Hs.287793
Alternative Splicing GalleryENSG00000120322
Gene ExpressionPCDHB8 [ NCBI-GEO ]   PCDHB8 [ EBI - ARRAY_EXPRESS ]   PCDHB8 [ SEEK ]   PCDHB8 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHB8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56128
GTEX Portal (Tissue expression)PCDHB8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UN66   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UN66  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UN66
Splice isoforms : SwissVarQ9UN66
PhosPhoSitePlusQ9UN66
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_C    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_C_2 (PF16492)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam16492   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHB8
DMDM Disease mutations56128
Blocks (Seattle)PCDHB8
SuperfamilyQ9UN66
Human Protein AtlasENSG00000120322
Peptide AtlasQ9UN66
HPRD07563
IPIIPI00009033   
Protein Interaction databases
DIP (DOE-UCLA)Q9UN66
IntAct (EBI)Q9UN66
FunCoupENSG00000120322
BioGRIDPCDHB8
STRING (EMBL)PCDHB8
ZODIACPCDHB8
Ontologies - Pathways
QuickGOQ9UN66
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  chemical synaptic transmission  synapse assembly  photoreceptor connecting cilium  identical protein binding  postsynaptic membrane  photoreceptor disc membrane  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  chemical synaptic transmission  synapse assembly  photoreceptor connecting cilium  identical protein binding  postsynaptic membrane  photoreceptor disc membrane  
NDEx NetworkPCDHB8
Atlas of Cancer Signalling NetworkPCDHB8
Wikipedia pathwaysPCDHB8
Orthology - Evolution
OrthoDB56128
GeneTree (enSembl)ENSG00000120322
Phylogenetic Trees/Animal Genes : TreeFamPCDHB8
HOVERGENQ9UN66
HOGENOMQ9UN66
Homologs : HomoloGenePCDHB8
Homology/Alignments : Family Browser (UCSC)PCDHB8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHB8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHB8
dbVarPCDHB8
ClinVarPCDHB8
1000_GenomesPCDHB8 
Exome Variant ServerPCDHB8
ExAC (Exome Aggregation Consortium)PCDHB8 (select the gene name)
Genetic variants : HAPMAP56128
Genomic Variants (DGV)PCDHB8 [DGVbeta]
DECIPHERPCDHB8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDHB8 
Mutations
ICGC Data PortalPCDHB8 
TCGA Data PortalPCDHB8 
Broad Tumor PortalPCDHB8
OASIS PortalPCDHB8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHB8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHB8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHB8
DgiDB (Drug Gene Interaction Database)PCDHB8
DoCM (Curated mutations)PCDHB8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHB8 (select a term)
intoGenPCDHB8
Cancer3DPCDHB8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606334   
Orphanet
MedgenPCDHB8
Genetic Testing Registry PCDHB8
NextProtQ9UN66 [Medical]
TSGene56128
GENETestsPCDHB8
Target ValidationPCDHB8
Huge Navigator PCDHB8 [HugePedia]
snp3D : Map Gene to Disease56128
BioCentury BCIQPCDHB8
ClinGenPCDHB8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56128
Chemical/Pharm GKB GenePA33042
Clinical trialPCDHB8
Miscellaneous
canSAR (ICR)PCDHB8 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHB8
EVEXPCDHB8
GoPubMedPCDHB8
iHOPPCDHB8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:46 CEST 2017

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