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PCDHB9 (protocadherin beta 9)

Identity

Other aliasPCDH-BETA9
PCDH3H
HGNC (Hugo) PCDHB9
LocusID (NCBI) 56127
Atlas_Id 57166
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141187561 and ends at 141191318 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHB9   8694
Cards
Entrez_Gene (NCBI)PCDHB9  56127  protocadherin beta 9
AliasesPCDH-BETA9; PCDH3H
GeneCards (Weizmann)PCDHB9
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:141187561-141191318 [Contig_View]  PCDHB9 [Vega]
TCGA cBioPortalPCDHB9
AceView (NCBI)PCDHB9
Genatlas (Paris)PCDHB9
WikiGenes56127
SOURCE (Princeton)PCDHB9
Genetics Home Reference (NIH)PCDHB9
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHB9  -     chr5:141187561-141191318 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHB9  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHB9 - 5q31.3 [CytoView hg19]  PCDHB9 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHB9 [Mapview hg19]  PCDHB9 [Mapview hg38]
OMIM606335   
Gene and transcription
Genbank (Entrez)AB208959 AF152502 AF217749 BC100672 BC103494
RefSeq transcript (Entrez)NM_019119
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHB9
Cluster EST : UnigeneHs.662726 [ NCBI ]
CGAP (NCI)Hs.662726
Gene ExpressionPCDHB9 [ NCBI-GEO ]   PCDHB9 [ EBI - ARRAY_EXPRESS ]   PCDHB9 [ SEEK ]   PCDHB9 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHB9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56127
GTEX Portal (Tissue expression)PCDHB9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5E1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5E1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5E1
Splice isoforms : SwissVarQ9Y5E1
PhosPhoSitePlusQ9Y5E1
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_C    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_C_2 (PF16492)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam16492   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHB9
DMDM Disease mutations56127
Blocks (Seattle)PCDHB9
SuperfamilyQ9Y5E1
Peptide AtlasQ9Y5E1
IPIIPI00001424   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5E1
IntAct (EBI)Q9Y5E1
BioGRIDPCDHB9
STRING (EMBL)PCDHB9
ZODIACPCDHB9
Ontologies - Pathways
QuickGOQ9Y5E1
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  chemical synaptic transmission  synapse assembly  integral component of membrane  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  chemical synaptic transmission  synapse assembly  integral component of membrane  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  
NDEx NetworkPCDHB9
Atlas of Cancer Signalling NetworkPCDHB9
Wikipedia pathwaysPCDHB9
Orthology - Evolution
OrthoDB56127
Phylogenetic Trees/Animal Genes : TreeFamPCDHB9
HOVERGENQ9Y5E1
HOGENOMQ9Y5E1
Homologs : HomoloGenePCDHB9
Homology/Alignments : Family Browser (UCSC)PCDHB9
Gene fusions - Rearrangements
Tumor Fusion PortalPCDHB9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHB9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHB9
dbVarPCDHB9
ClinVarPCDHB9
1000_GenomesPCDHB9 
Exome Variant ServerPCDHB9
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP56127
Genomic Variants (DGV)PCDHB9 [DGVbeta]
DECIPHERPCDHB9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDHB9 
Mutations
ICGC Data PortalPCDHB9 
TCGA Data PortalPCDHB9 
Broad Tumor PortalPCDHB9
OASIS PortalPCDHB9 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPCDHB9
BioMutasearch PCDHB9
DgiDB (Drug Gene Interaction Database)PCDHB9
DoCM (Curated mutations)PCDHB9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHB9 (select a term)
intoGenPCDHB9
Cancer3DPCDHB9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606335   
Orphanet
DisGeNETPCDHB9
MedgenPCDHB9
Genetic Testing Registry PCDHB9
NextProtQ9Y5E1 [Medical]
TSGene56127
GENETestsPCDHB9
Target ValidationPCDHB9
Huge Navigator PCDHB9 [HugePedia]
snp3D : Map Gene to Disease56127
BioCentury BCIQPCDHB9
ClinGenPCDHB9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56127
Chemical/Pharm GKB GenePA33043
Clinical trialPCDHB9
Miscellaneous
canSAR (ICR)PCDHB9 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHB9
EVEXPCDHB9
GoPubMedPCDHB9
iHOPPCDHB9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:28:01 CET 2017

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