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PCDHB@ (protocadherin beta cluster)

Identity

Alias_symbol (synonym)PCDH3
Other alias
HGNC (Hugo) PCDHB@
LocusID (NCBI) 56116
Atlas_Id 51406
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141051394 and ends at 141248234 bp from pter
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)PCDHB@   8679
Cards
Entrez_Gene (NCBI)PCDHB@  56116  protocadherin beta cluster
AliasesPCDH3
GeneCards (Weizmann)PCDHB@
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr5:141051394-141248234 [Contig_View]  PCDHB@ [Vega]
TCGA cBioPortalPCDHB@
AceView (NCBI)PCDHB@
Genatlas (Paris)PCDHB@
WikiGenes56116
SOURCE (Princeton)PCDHB@
Genetics Home Reference (NIH)PCDHB@
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHB@  -     chr5:141051394-141248234 -  hg38-Dec_2013   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHB@  -     hg38-Dec_2013   [Description]    (hg19-Feb_2009)
EnsemblPCDHB@ - hg38-Dec_2013 [CytoView hg19]  PCDHB@ - hg38-Dec_2013 [CytoView hg38]
Mapping of homologs : NCBIPCDHB@ [Mapview hg19]  PCDHB@ [Mapview hg38]
OMIM604967   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHB@
Gene ExpressionPCDHB@ [ NCBI-GEO ]   PCDHB@ [ EBI - ARRAY_EXPRESS ]   PCDHB@ [ SEEK ]   PCDHB@ [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHB@ [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)56116
GTEX Portal (Tissue expression)PCDHB@
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PCDHB@
DMDM Disease mutations56116
Blocks (Seattle)PCDHB@
Protein Interaction databases
BioGRIDPCDHB@
STRING (EMBL)PCDHB@
ZODIACPCDHB@
Ontologies - Pathways
Huge Navigator PCDHB@ [HugePedia]
snp3D : Map Gene to Disease56116
BioCentury BCIQPCDHB@
ClinGenPCDHB@
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56116
Chemical/Pharm GKB GenePA35502
Clinical trialPCDHB@
Miscellaneous
canSAR (ICR)PCDHB@ (select the gene name)
DataMed IndexPCDHB@
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHB@
EVEXPCDHB@
GoPubMedPCDHB@
iHOPPCDHB@
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 17 18:29:55 CET 2019

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