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PCDHGA1 (protocadherin gamma subfamily A, 1)

Identity

Alias_symbol (synonym)PCDH-GAMMA-A1
Other alias
HGNC (Hugo) PCDHGA1
LocusID (NCBI) 56114
Atlas_Id 54530
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141330685 and ends at 141512979 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MYB (6q23.3) / PCDHGA1 (5q31.3)PCDHGA1 (5q31.3) / PCDHGA1 (5q31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHGA1   8696
Cards
Entrez_Gene (NCBI)PCDHGA1  56114  protocadherin gamma subfamily A, 1
AliasesPCDH-GAMMA-A1
GeneCards (Weizmann)PCDHGA1
Ensembl hg19 (Hinxton)ENSG00000204956 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204956 [Gene_View]  chr5:141330685-141512979 [Contig_View]  PCDHGA1 [Vega]
ICGC DataPortalENSG00000204956
TCGA cBioPortalPCDHGA1
AceView (NCBI)PCDHGA1
Genatlas (Paris)PCDHGA1
WikiGenes56114
SOURCE (Princeton)PCDHGA1
Genetics Home Reference (NIH)PCDHGA1
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHGA1  -     chr5:141330685-141512979 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHGA1  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHGA1 - 5q31.3 [CytoView hg19]  PCDHGA1 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHGA1 [Mapview hg19]  PCDHGA1 [Mapview hg38]
OMIM606288   
Gene and transcription
Genbank (Entrez)AF152318 AF152507 BC112082 BC112084
RefSeq transcript (Entrez)NM_018912 NM_031993
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHGA1
Cluster EST : UnigeneHs.368160 [ NCBI ]
CGAP (NCI)Hs.368160
Alternative Splicing GalleryENSG00000204956
Gene ExpressionPCDHGA1 [ NCBI-GEO ]   PCDHGA1 [ EBI - ARRAY_EXPRESS ]   PCDHGA1 [ SEEK ]   PCDHGA1 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHGA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56114
GTEX Portal (Tissue expression)PCDHGA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5H4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5H4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5H4
Splice isoforms : SwissVarQ9Y5H4
PhosPhoSitePlusQ9Y5H4
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_C    Cadherin_CBD    Cadherin_CS    Cadherin_N    PCDHGA1   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_C_2 (PF16492)    Cadherin_tail (PF15974)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam16492    pfam15974   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHGA1
DMDM Disease mutations56114
Blocks (Seattle)PCDHGA1
SuperfamilyQ9Y5H4
Human Protein AtlasENSG00000204956
Peptide AtlasQ9Y5H4
HPRD07551
IPIIPI00003871   IPI00012083   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5H4
IntAct (EBI)Q9Y5H4
FunCoupENSG00000204956
BioGRIDPCDHGA1
STRING (EMBL)PCDHGA1
ZODIACPCDHGA1
Ontologies - Pathways
QuickGOQ9Y5H4
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
NDEx NetworkPCDHGA1
Atlas of Cancer Signalling NetworkPCDHGA1
Wikipedia pathwaysPCDHGA1
Orthology - Evolution
OrthoDB56114
GeneTree (enSembl)ENSG00000204956
Phylogenetic Trees/Animal Genes : TreeFamPCDHGA1
HOVERGENQ9Y5H4
HOGENOMQ9Y5H4
Homologs : HomoloGenePCDHGA1
Homology/Alignments : Family Browser (UCSC)PCDHGA1
Gene fusions - Rearrangements
Fusion : MitelmanMYB/PCDHGA1 [6q23.3/5q31.3]  [t(5;6)(q31;q23)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHGA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHGA1
dbVarPCDHGA1
ClinVarPCDHGA1
1000_GenomesPCDHGA1 
Exome Variant ServerPCDHGA1
ExAC (Exome Aggregation Consortium)PCDHGA1 (select the gene name)
Genetic variants : HAPMAP56114
Genomic Variants (DGV)PCDHGA1 [DGVbeta]
DECIPHERPCDHGA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDHGA1 
Mutations
ICGC Data PortalPCDHGA1 
TCGA Data PortalPCDHGA1 
Broad Tumor PortalPCDHGA1
OASIS PortalPCDHGA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHGA1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHGA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHGA1
DgiDB (Drug Gene Interaction Database)PCDHGA1
DoCM (Curated mutations)PCDHGA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHGA1 (select a term)
intoGenPCDHGA1
Cancer3DPCDHGA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606288   
Orphanet
MedgenPCDHGA1
Genetic Testing Registry PCDHGA1
NextProtQ9Y5H4 [Medical]
TSGene56114
GENETestsPCDHGA1
Target ValidationPCDHGA1
Huge Navigator PCDHGA1 [HugePedia]
snp3D : Map Gene to Disease56114
BioCentury BCIQPCDHGA1
ClinGenPCDHGA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56114
Chemical/Pharm GKB GenePA33044
Clinical trialPCDHGA1
Miscellaneous
canSAR (ICR)PCDHGA1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHGA1
EVEXPCDHGA1
GoPubMedPCDHGA1
iHOPPCDHGA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:24:00 CEST 2017

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