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PCDHGA10 (protocadherin gamma subfamily A, 10)

Identity

Alias_symbol (synonym)PCDH-GAMMA-A10
Other alias
HGNC (Hugo) PCDHGA10
LocusID (NCBI) 56106
Atlas_Id 71738
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141413176 and ends at 141512979 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHGA10   8697
Cards
Entrez_Gene (NCBI)PCDHGA10  56106  protocadherin gamma subfamily A, 10
AliasesPCDH-GAMMA-A10
GeneCards (Weizmann)PCDHGA10
Ensembl hg19 (Hinxton)ENSG00000253846 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253846 [Gene_View]  chr5:141413176-141512979 [Contig_View]  PCDHGA10 [Vega]
ICGC DataPortalENSG00000253846
TCGA cBioPortalPCDHGA10
AceView (NCBI)PCDHGA10
Genatlas (Paris)PCDHGA10
WikiGenes56106
SOURCE (Princeton)PCDHGA10
Genetics Home Reference (NIH)PCDHGA10
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHGA10  -     chr5:141413176-141512979 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHGA10  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHGA10 - 5q31.3 [CytoView hg19]  PCDHGA10 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHGA10 [Mapview hg19]  PCDHGA10 [Mapview hg38]
OMIM606297   
Gene and transcription
Genbank (Entrez)AF152319 AF152503 BC014509 BC093873 BC093875
RefSeq transcript (Entrez)NM_018913 NM_032090
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHGA10
Cluster EST : UnigeneHs.368160 [ NCBI ]
CGAP (NCI)Hs.368160
Alternative Splicing GalleryENSG00000253846
Gene ExpressionPCDHGA10 [ NCBI-GEO ]   PCDHGA10 [ EBI - ARRAY_EXPRESS ]   PCDHGA10 [ SEEK ]   PCDHGA10 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHGA10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56106
GTEX Portal (Tissue expression)PCDHGA10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5H3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5H3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5H3
Splice isoforms : SwissVarQ9Y5H3
PhosPhoSitePlusQ9Y5H3
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_C    Cadherin_CBD    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_C_2 (PF16492)    Cadherin_tail (PF15974)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam16492    pfam15974   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHGA10
DMDM Disease mutations56106
Blocks (Seattle)PCDHGA10
SuperfamilyQ9Y5H3
Human Protein AtlasENSG00000253846
Peptide AtlasQ9Y5H3
HPRD09387
IPIIPI00215834   IPI00012546   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5H3
IntAct (EBI)Q9Y5H3
FunCoupENSG00000253846
BioGRIDPCDHGA10
STRING (EMBL)PCDHGA10
ZODIACPCDHGA10
Ontologies - Pathways
QuickGOQ9Y5H3
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
NDEx NetworkPCDHGA10
Atlas of Cancer Signalling NetworkPCDHGA10
Wikipedia pathwaysPCDHGA10
Orthology - Evolution
OrthoDB56106
GeneTree (enSembl)ENSG00000253846
Phylogenetic Trees/Animal Genes : TreeFamPCDHGA10
HOVERGENQ9Y5H3
HOGENOMQ9Y5H3
Homologs : HomoloGenePCDHGA10
Homology/Alignments : Family Browser (UCSC)PCDHGA10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHGA10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHGA10
dbVarPCDHGA10
ClinVarPCDHGA10
1000_GenomesPCDHGA10 
Exome Variant ServerPCDHGA10
ExAC (Exome Aggregation Consortium)PCDHGA10 (select the gene name)
Genetic variants : HAPMAP56106
Genomic Variants (DGV)PCDHGA10 [DGVbeta]
DECIPHERPCDHGA10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDHGA10 
Mutations
ICGC Data PortalPCDHGA10 
TCGA Data PortalPCDHGA10 
Broad Tumor PortalPCDHGA10
OASIS PortalPCDHGA10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHGA10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHGA10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHGA10
DgiDB (Drug Gene Interaction Database)PCDHGA10
DoCM (Curated mutations)PCDHGA10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHGA10 (select a term)
intoGenPCDHGA10
Cancer3DPCDHGA10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606297   
Orphanet
MedgenPCDHGA10
Genetic Testing Registry PCDHGA10
NextProtQ9Y5H3 [Medical]
TSGene56106
GENETestsPCDHGA10
Target ValidationPCDHGA10
Huge Navigator PCDHGA10 [HugePedia]
snp3D : Map Gene to Disease56106
BioCentury BCIQPCDHGA10
ClinGenPCDHGA10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56106
Chemical/Pharm GKB GenePA33045
Clinical trialPCDHGA10
Miscellaneous
canSAR (ICR)PCDHGA10 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHGA10
EVEXPCDHGA10
GoPubMedPCDHGA10
iHOPPCDHGA10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:46 CEST 2017

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