PCDHGA11 (protocadherin gamma subfamily A, 11)

2014-06-01  

Identity

HGNC
PCDHGA11
LOCATION
5q31.3
LOCUSID
56105
ALIAS
PCDH-GAMMA-A11

Other Information

Locus ID:

NCBI: 56105
MIM: 606298
HGNC: 8698
Ensembl: ENSG00000253873

Variants:

dbSNP: 56105
ClinVar: 56105
TCGA: ENSG00000253873
COSMIC: PCDHGA11

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000253873ENST00000398587Q9Y5H2
ENSG00000253873ENST00000518882Q9Y5H2
ENSG00000253873ENST00000622044Q9Y5H2

Expression (GTEx)

0
5
10
15
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
157998192005Epigenetic silencing of the protocadherin family member PCDH-gamma-A11 in astrocytomas.41
203884422010[The methylation analysis of EMP3 and PCDH-gamma-A11 gene in human glioma].3

Citation

Dessen P

PCDHGA11 (protocadherin gamma subfamily A, 11)

Atlas Genet Cytogenet Oncol Haematol. 2014-06-01

Online version: http://atlasgeneticsoncology.org/gene/53951/pcdhga11