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PCDHGA11 (protocadherin gamma subfamily A, 11)

Identity

Alias_symbol (synonym)PCDH-GAMMA-A11
Other alias
HGNC (Hugo) PCDHGA11
LocusID (NCBI) 56105
Atlas_Id 53951
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140800537 and ends at 140892546 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHGA11   8698
Cards
Entrez_Gene (NCBI)PCDHGA11  56105  protocadherin gamma subfamily A, 11
AliasesPCDH-GAMMA-A11
GeneCards (Weizmann)PCDHGA11
Ensembl hg19 (Hinxton)ENSG00000253873 [Gene_View]  chr5:140800537-140892546 [Contig_View]  PCDHGA11 [Vega]
Ensembl hg38 (Hinxton)ENSG00000253873 [Gene_View]  chr5:140800537-140892546 [Contig_View]  PCDHGA11 [Vega]
ICGC DataPortalENSG00000253873
TCGA cBioPortalPCDHGA11
AceView (NCBI)PCDHGA11
Genatlas (Paris)PCDHGA11
WikiGenes56105
SOURCE (Princeton)PCDHGA11
Genetics Home Reference (NIH)PCDHGA11
Genomic and cartography
GoldenPath hg19 (UCSC)PCDHGA11  -     chr5:140800537-140892546 +  5q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PCDHGA11  -     5q31.3   [Description]    (hg38-Dec_2013)
EnsemblPCDHGA11 - 5q31.3 [CytoView hg19]  PCDHGA11 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHGA11 [Mapview hg19]  PCDHGA11 [Mapview hg38]
OMIM606298   
Gene and transcription
Genbank (Entrez)AA329824 AF152320 AF152504 AF152505 BC136781
RefSeq transcript (Entrez)NM_018914 NM_032091 NM_032092
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_000012 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)PCDHGA11
Cluster EST : UnigeneHs.368160 [ NCBI ]
CGAP (NCI)Hs.368160
Alternative Splicing GalleryENSG00000253873
Gene ExpressionPCDHGA11 [ NCBI-GEO ]   PCDHGA11 [ EBI - ARRAY_EXPRESS ]   PCDHGA11 [ SEEK ]   PCDHGA11 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHGA11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56105
GTEX Portal (Tissue expression)PCDHGA11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5H2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5H2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5H2
Splice isoforms : SwissVarQ9Y5H2
PhosPhoSitePlusQ9Y5H2
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_C    Cadherin_CBD    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_C_2 (PF16492)    Cadherin_tail (PF15974)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam16492    pfam15974   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHGA11
DMDM Disease mutations56105
Blocks (Seattle)PCDHGA11
SuperfamilyQ9Y5H2
Human Protein AtlasENSG00000253873
Peptide AtlasQ9Y5H2
HPRD09388
IPIIPI00215835   IPI00012549   IPI00012551   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5H2
IntAct (EBI)Q9Y5H2
FunCoupENSG00000253873
BioGRIDPCDHGA11
STRING (EMBL)PCDHGA11
ZODIACPCDHGA11
Ontologies - Pathways
QuickGOQ9Y5H2
Ontology : AmiGOcalcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  
Ontology : EGO-EBIcalcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  
NDEx NetworkPCDHGA11
Atlas of Cancer Signalling NetworkPCDHGA11
Wikipedia pathwaysPCDHGA11
Orthology - Evolution
OrthoDB56105
GeneTree (enSembl)ENSG00000253873
Phylogenetic Trees/Animal Genes : TreeFamPCDHGA11
HOVERGENQ9Y5H2
HOGENOMQ9Y5H2
Homologs : HomoloGenePCDHGA11
Homology/Alignments : Family Browser (UCSC)PCDHGA11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHGA11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHGA11
dbVarPCDHGA11
ClinVarPCDHGA11
1000_GenomesPCDHGA11 
Exome Variant ServerPCDHGA11
ExAC (Exome Aggregation Consortium)PCDHGA11 (select the gene name)
Genetic variants : HAPMAP56105
Genomic Variants (DGV)PCDHGA11 [DGVbeta]
DECIPHER (Syndromes)5:140800537-140892546  ENSG00000253873
CONAN: Copy Number AnalysisPCDHGA11 
Mutations
ICGC Data PortalPCDHGA11 
TCGA Data PortalPCDHGA11 
Broad Tumor PortalPCDHGA11
OASIS PortalPCDHGA11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHGA11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHGA11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHGA11
DgiDB (Drug Gene Interaction Database)PCDHGA11
DoCM (Curated mutations)PCDHGA11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHGA11 (select a term)
intoGenPCDHGA11
Cancer3DPCDHGA11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606298   
Orphanet
MedgenPCDHGA11
Genetic Testing Registry PCDHGA11
NextProtQ9Y5H2 [Medical]
TSGene56105
GENETestsPCDHGA11
Huge Navigator PCDHGA11 [HugePedia]
snp3D : Map Gene to Disease56105
BioCentury BCIQPCDHGA11
ClinGenPCDHGA11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56105
Chemical/Pharm GKB GenePA33046
Clinical trialPCDHGA11
Miscellaneous
canSAR (ICR)PCDHGA11 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHGA11
EVEXPCDHGA11
GoPubMedPCDHGA11
iHOPPCDHGA11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:13:43 CEST 2017

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