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PCDHGA12 (protocadherin gamma subfamily A, 12)

Identity

Alias_namesCDH21
cadherin 21
Alias_symbol (synonym)KIAA0588
FIB3
PCDH-GAMMA-A12
Other alias
HGNC (Hugo) PCDHGA12
LocusID (NCBI) 26025
Atlas_Id 71739
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140810158 and ends at 140892546 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHGA12   8699
Cards
Entrez_Gene (NCBI)PCDHGA12  26025  protocadherin gamma subfamily A, 12
AliasesCDH21; FIB3; PCDH-GAMMA-A12
GeneCards (Weizmann)PCDHGA12
Ensembl hg19 (Hinxton)ENSG00000253159 [Gene_View]  chr5:140810158-140892546 [Contig_View]  PCDHGA12 [Vega]
Ensembl hg38 (Hinxton)ENSG00000253159 [Gene_View]  chr5:140810158-140892546 [Contig_View]  PCDHGA12 [Vega]
ICGC DataPortalENSG00000253159
TCGA cBioPortalPCDHGA12
AceView (NCBI)PCDHGA12
Genatlas (Paris)PCDHGA12
WikiGenes26025
SOURCE (Princeton)PCDHGA12
Genetics Home Reference (NIH)PCDHGA12
Genomic and cartography
GoldenPath hg19 (UCSC)PCDHGA12  -     chr5:140810158-140892546 +  5q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PCDHGA12  -     5q31.3   [Description]    (hg38-Dec_2013)
EnsemblPCDHGA12 - 5q31.3 [CytoView hg19]  PCDHGA12 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHGA12 [Mapview hg19]  PCDHGA12 [Mapview hg38]
OMIM603059   
Gene and transcription
Genbank (Entrez)AB000897 AB011160 AF152321 AF152506 AL589367
RefSeq transcript (Entrez)NM_003735 NM_032094
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_000012 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)PCDHGA12
Cluster EST : UnigeneHs.368160 [ NCBI ]
CGAP (NCI)Hs.368160
Alternative Splicing GalleryENSG00000253159
Gene ExpressionPCDHGA12 [ NCBI-GEO ]   PCDHGA12 [ EBI - ARRAY_EXPRESS ]   PCDHGA12 [ SEEK ]   PCDHGA12 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHGA12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26025
GTEX Portal (Tissue expression)PCDHGA12
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60330   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60330  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60330
Splice isoforms : SwissVarO60330
PhosPhoSitePlusO60330
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)   
Domain families : Pfam (NCBI)pfam00028    pfam08266   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHGA12
DMDM Disease mutations26025
Blocks (Seattle)PCDHGA12
SuperfamilyO60330
Human Protein AtlasENSG00000253159
Peptide AtlasO60330
HPRD07538
IPIIPI00021477   IPI00028613   IPI00787589   
Protein Interaction databases
DIP (DOE-UCLA)O60330
IntAct (EBI)O60330
FunCoupENSG00000253159
BioGRIDPCDHGA12
STRING (EMBL)PCDHGA12
ZODIACPCDHGA12
Ontologies - Pathways
QuickGOO60330
Ontology : AmiGOcalcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  
Ontology : EGO-EBIcalcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  
NDEx NetworkPCDHGA12
Atlas of Cancer Signalling NetworkPCDHGA12
Wikipedia pathwaysPCDHGA12
Orthology - Evolution
OrthoDB26025
GeneTree (enSembl)ENSG00000253159
Phylogenetic Trees/Animal Genes : TreeFamPCDHGA12
HOVERGENO60330
HOGENOMO60330
Homologs : HomoloGenePCDHGA12
Homology/Alignments : Family Browser (UCSC)PCDHGA12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHGA12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHGA12
dbVarPCDHGA12
ClinVarPCDHGA12
1000_GenomesPCDHGA12 
Exome Variant ServerPCDHGA12
ExAC (Exome Aggregation Consortium)PCDHGA12 (select the gene name)
Genetic variants : HAPMAP26025
Genomic Variants (DGV)PCDHGA12 [DGVbeta]
DECIPHER (Syndromes)5:140810158-140892546  ENSG00000253159
CONAN: Copy Number AnalysisPCDHGA12 
Mutations
ICGC Data PortalPCDHGA12 
TCGA Data PortalPCDHGA12 
Broad Tumor PortalPCDHGA12
OASIS PortalPCDHGA12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHGA12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHGA12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHGA12
DgiDB (Drug Gene Interaction Database)PCDHGA12
DoCM (Curated mutations)PCDHGA12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHGA12 (select a term)
intoGenPCDHGA12
Cancer3DPCDHGA12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603059   
Orphanet
MedgenPCDHGA12
Genetic Testing Registry PCDHGA12
NextProtO60330 [Medical]
TSGene26025
GENETestsPCDHGA12
Huge Navigator PCDHGA12 [HugePedia]
snp3D : Map Gene to Disease26025
BioCentury BCIQPCDHGA12
ClinGenPCDHGA12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26025
Chemical/Pharm GKB GenePA33047
Clinical trialPCDHGA12
Miscellaneous
canSAR (ICR)PCDHGA12 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHGA12
EVEXPCDHGA12
GoPubMedPCDHGA12
iHOPPCDHGA12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:38:03 CET 2017

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