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PCDHGA2 (protocadherin gamma subfamily A, 2)

Identity

Alias_symbol (synonym)PCDH-GAMMA-A2
Other alias
HGNC (Hugo) PCDHGA2
LocusID (NCBI) 56113
Atlas_Id 71740
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141338760 and ends at 141512979 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHGA2   8700
Cards
Entrez_Gene (NCBI)PCDHGA2  56113  protocadherin gamma subfamily A, 2
AliasesPCDH-GAMMA-A2
GeneCards (Weizmann)PCDHGA2
Ensembl hg19 (Hinxton)ENSG00000081853 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000081853 [Gene_View]  chr5:141338760-141512979 [Contig_View]  PCDHGA2 [Vega]
ICGC DataPortalENSG00000081853
TCGA cBioPortalPCDHGA2
AceView (NCBI)PCDHGA2
Genatlas (Paris)PCDHGA2
WikiGenes56113
SOURCE (Princeton)PCDHGA2
Genetics Home Reference (NIH)PCDHGA2
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHGA2  -     chr5:141338760-141512979 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHGA2  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHGA2 - 5q31.3 [CytoView hg19]  PCDHGA2 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHGA2 [Mapview hg19]  PCDHGA2 [Mapview hg38]
OMIM606289   
Gene and transcription
Genbank (Entrez)AF152322 AF152508 AL536793 BC093871 BC104950
RefSeq transcript (Entrez)NM_018915 NM_032009
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHGA2
Cluster EST : UnigeneHs.368160 [ NCBI ]
CGAP (NCI)Hs.368160
Alternative Splicing GalleryENSG00000081853
Gene ExpressionPCDHGA2 [ NCBI-GEO ]   PCDHGA2 [ EBI - ARRAY_EXPRESS ]   PCDHGA2 [ SEEK ]   PCDHGA2 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHGA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56113
GTEX Portal (Tissue expression)PCDHGA2
Human Protein AtlasENSG00000081853-PCDHGA2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5H1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5H1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5H1
Splice isoforms : SwissVarQ9Y5H1
PhosPhoSitePlusQ9Y5H1
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_C    Cadherin_CBD    Cadherin_CS    Cadherin_N    PCDHGA2   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_C_2 (PF16492)    Cadherin_tail (PF15974)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam16492    pfam15974   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHGA2
DMDM Disease mutations56113
Blocks (Seattle)PCDHGA2
SuperfamilyQ9Y5H1
Human Protein Atlas [tissue]ENSG00000081853-PCDHGA2 [tissue]
Peptide AtlasQ9Y5H1
HPRD07552
IPIIPI00215836   IPI00012100   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5H1
IntAct (EBI)Q9Y5H1
FunCoupENSG00000081853
BioGRIDPCDHGA2
STRING (EMBL)PCDHGA2
ZODIACPCDHGA2
Ontologies - Pathways
QuickGOQ9Y5H1
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
NDEx NetworkPCDHGA2
Atlas of Cancer Signalling NetworkPCDHGA2
Wikipedia pathwaysPCDHGA2
Orthology - Evolution
OrthoDB56113
GeneTree (enSembl)ENSG00000081853
Phylogenetic Trees/Animal Genes : TreeFamPCDHGA2
HOVERGENQ9Y5H1
HOGENOMQ9Y5H1
Homologs : HomoloGenePCDHGA2
Homology/Alignments : Family Browser (UCSC)PCDHGA2
Gene fusions - Rearrangements
Fusion: Tumor Portal PCDHGA2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHGA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHGA2
dbVarPCDHGA2
ClinVarPCDHGA2
1000_GenomesPCDHGA2 
Exome Variant ServerPCDHGA2
ExAC (Exome Aggregation Consortium)ENSG00000081853
GNOMAD BrowserENSG00000081853
Genetic variants : HAPMAP56113
Genomic Variants (DGV)PCDHGA2 [DGVbeta]
DECIPHERPCDHGA2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDHGA2 
Mutations
ICGC Data PortalPCDHGA2 
TCGA Data PortalPCDHGA2 
Broad Tumor PortalPCDHGA2
OASIS PortalPCDHGA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHGA2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHGA2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHGA2
DgiDB (Drug Gene Interaction Database)PCDHGA2
DoCM (Curated mutations)PCDHGA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHGA2 (select a term)
intoGenPCDHGA2
Cancer3DPCDHGA2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606289   
Orphanet
MedgenPCDHGA2
Genetic Testing Registry PCDHGA2
NextProtQ9Y5H1 [Medical]
TSGene56113
GENETestsPCDHGA2
Target ValidationPCDHGA2
Huge Navigator PCDHGA2 [HugePedia]
snp3D : Map Gene to Disease56113
BioCentury BCIQPCDHGA2
ClinGenPCDHGA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56113
Chemical/Pharm GKB GenePA33048
Clinical trialPCDHGA2
Miscellaneous
canSAR (ICR)PCDHGA2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHGA2
EVEXPCDHGA2
GoPubMedPCDHGA2
iHOPPCDHGA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:21:58 CET 2017

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