Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PCDHGA3 (protocadherin gamma subfamily A, 3)

Identity

Other aliasPCDH-GAMMA-A3
HGNC (Hugo) PCDHGA3
LocusID (NCBI) 56112
Atlas_Id 56643
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141344034 and ends at 141512979 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHGA3   8701
Cards
Entrez_Gene (NCBI)PCDHGA3  56112  protocadherin gamma subfamily A, 3
AliasesPCDH-GAMMA-A3
GeneCards (Weizmann)PCDHGA3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:141344034-141512979 [Contig_View]  PCDHGA3 [Vega]
TCGA cBioPortalPCDHGA3
AceView (NCBI)PCDHGA3
Genatlas (Paris)PCDHGA3
WikiGenes56112
SOURCE (Princeton)PCDHGA3
Genetics Home Reference (NIH)PCDHGA3
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHGA3  -     chr5:141344034-141512979 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHGA3  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHGA3 - 5q31.3 [CytoView hg19]  PCDHGA3 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHGA3 [Mapview hg19]  PCDHGA3 [Mapview hg38]
OMIM606290   
Gene and transcription
Genbank (Entrez)AB208927 AF152323 AF152510 BC115408 BC115409
RefSeq transcript (Entrez)NM_018916 NM_032011
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHGA3
Cluster EST : UnigeneHs.368160 [ NCBI ]
CGAP (NCI)Hs.368160
Gene ExpressionPCDHGA3 [ NCBI-GEO ]   PCDHGA3 [ EBI - ARRAY_EXPRESS ]   PCDHGA3 [ SEEK ]   PCDHGA3 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHGA3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56112
GTEX Portal (Tissue expression)PCDHGA3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5H0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5H0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5H0
Splice isoforms : SwissVarQ9Y5H0
PhosPhoSitePlusQ9Y5H0
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_C    Cadherin_CBD    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_C_2 (PF16492)    Cadherin_tail (PF15974)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam16492    pfam15974   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHGA3
DMDM Disease mutations56112
Blocks (Seattle)PCDHGA3
SuperfamilyQ9Y5H0
Peptide AtlasQ9Y5H0
IPIIPI00295053   IPI00377059   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5H0
IntAct (EBI)Q9Y5H0
BioGRIDPCDHGA3
STRING (EMBL)PCDHGA3
ZODIACPCDHGA3
Ontologies - Pathways
QuickGOQ9Y5H0
Ontology : AmiGOcalcium ion binding  intracellular  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  endosome to lysosome transport  lipid tube assembly involved in organelle fusion  
Ontology : EGO-EBIcalcium ion binding  intracellular  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  endosome to lysosome transport  lipid tube assembly involved in organelle fusion  
NDEx NetworkPCDHGA3
Atlas of Cancer Signalling NetworkPCDHGA3
Wikipedia pathwaysPCDHGA3
Orthology - Evolution
OrthoDB56112
Phylogenetic Trees/Animal Genes : TreeFamPCDHGA3
HOVERGENQ9Y5H0
HOGENOMQ9Y5H0
Homologs : HomoloGenePCDHGA3
Homology/Alignments : Family Browser (UCSC)PCDHGA3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHGA3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHGA3
dbVarPCDHGA3
ClinVarPCDHGA3
1000_GenomesPCDHGA3 
Exome Variant ServerPCDHGA3
ExAC (Exome Aggregation Consortium)PCDHGA3 (select the gene name)
Genetic variants : HAPMAP56112
Genomic Variants (DGV)PCDHGA3 [DGVbeta]
DECIPHERPCDHGA3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDHGA3 
Mutations
ICGC Data PortalPCDHGA3 
TCGA Data PortalPCDHGA3 
Broad Tumor PortalPCDHGA3
OASIS PortalPCDHGA3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHGA3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHGA3
BioMutasearch PCDHGA3
DgiDB (Drug Gene Interaction Database)PCDHGA3
DoCM (Curated mutations)PCDHGA3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHGA3 (select a term)
intoGenPCDHGA3
Cancer3DPCDHGA3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606290   
Orphanet
MedgenPCDHGA3
Genetic Testing Registry PCDHGA3
NextProtQ9Y5H0 [Medical]
TSGene56112
GENETestsPCDHGA3
Target ValidationPCDHGA3
Huge Navigator PCDHGA3 [HugePedia]
snp3D : Map Gene to Disease56112
BioCentury BCIQPCDHGA3
ClinGenPCDHGA3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56112
Chemical/Pharm GKB GenePA33049
Clinical trialPCDHGA3
Miscellaneous
canSAR (ICR)PCDHGA3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHGA3
EVEXPCDHGA3
GoPubMedPCDHGA3
iHOPPCDHGA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:24:01 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.