PCDHGA3 (protocadherin gamma subfamily A, 3)

2016-12-01 Affiliation

Identity

HGNC

PCDHGA3

LOCATION

5q31.3

LOCUSID

56112

ALIAS

PCDH-GAMMA-A3

Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, contribute in submission tool

Other Information

Locus ID:

NCBI: 56112
MIM: 606290
HGNC: 8701
Ensembl: ENSG00000254245

Variants:

dbSNP: 56112
ClinVar: 56112
TCGA: ENSG00000254245
COSMIC: PCDHGA3

RNA/Proteins

Gene ID	Transcript ID	Uniprot
ENSG00000254245	ENST00000253812	Q9Y5H0
ENSG00000254245	ENST00000612467	A0A087WYH2
ENSG00000254245	ENST00000619750	Q9Y5H0

Expression (GTEx)

Adipose - Subcutaneous

Adipose - Visceral

Adrenal Gland

Artery - Aorta

Artery - Tibial

Bladder

Brain - Amygdala

Brain - Anterior cingulate cortex

Brain - Caudate

Brain - Cerebellar Hemisphere

Brain - Cerebellum

Brain - Cortex

Brain - Frontal Cortex

Brain - Hippocampus

Brain - Hypothalamus

Brain - Nucleus accumbens

Brain - Putamen

Brain - Spinal cord

Brain - Substantia nigra

Breast - Mammary Tissue

Cells - Cultured fibroblasts

Cells - EBV - transformed lymphocytes

Cervix - Ectocervix

Cervix - Endocervix

Colon - Sigmoid

Colon - Transverse

Esophagus - Gastroesophageal Junction

Esophagus - Mucosa

Esophagus - Muscularis

Fallopian Tube

Heart - Atrial Appendage

Heart - Left Ventricle

Kidney - Cortex

Kidney - Medulla

Liver

Lung

Minor Salivary Gland

Muscle - Skeletal

Nerve - Tibial

Ovary

Pancreas

Pituitary

Prostate

Skin - Not Sun Exposed

Skin - Sun Exposed

Small Intestine - Terminal Ileum

Spleen

Stomach

Testis

Thyroid

Uterus

Vagina

Whole Blood

Protein levels (Protein atlas)

Not detected

Low

Medium

High

References

Pubmed ID	Year	Title	Citations
20379614	2010	Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.	62
30136078	2018	DNA methylation associated with healthy aging of elderly twins.	7
27472518	2016	New Cell Adhesion Molecules in Human Ischemic Cardiomyopathy. PCDHGA3 Implications in Decreased Stroke Volume and Ventricular Dysfunction.	4
26608278	2015	The clustered protocadherin endolysosomal trafficking motif mediates cytoplasmic association.	3
27748813	2016	Protocadherin γ A3 is expressed in follicular lymphoma irrespective of BCL2 status and is associated with tumor cell growth.	2

Citation

Dessen P

PCDHGA3 (protocadherin gamma subfamily A, 3)

Atlas Genet Cytogenet Oncol Haematol. 2016-12-01

Online version: http://atlasgeneticsoncology.org/gene/56643/pcdhga3