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PCDHGA4 (protocadherin gamma subfamily A, 4)

Identity

Alias_symbol (synonym)PCDH-GAMMA-A4
Other alias
HGNC (Hugo) PCDHGA4
LocusID (NCBI) 56111
Atlas_Id 71742
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141355025 and ends at 141512979 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHGA4   8702
Cards
Entrez_Gene (NCBI)PCDHGA4  56111  protocadherin gamma subfamily A, 4
AliasesPCDH-GAMMA-A4
GeneCards (Weizmann)PCDHGA4
Ensembl hg19 (Hinxton)ENSG00000262576 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000262576 [Gene_View]  chr5:141355025-141512979 [Contig_View]  PCDHGA4 [Vega]
ICGC DataPortalENSG00000262576
TCGA cBioPortalPCDHGA4
AceView (NCBI)PCDHGA4
Genatlas (Paris)PCDHGA4
WikiGenes56111
SOURCE (Princeton)PCDHGA4
Genetics Home Reference (NIH)PCDHGA4
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHGA4  -     chr5:141355025-141512979 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHGA4  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHGA4 - 5q31.3 [CytoView hg19]  PCDHGA4 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHGA4 [Mapview hg19]  PCDHGA4 [Mapview hg38]
OMIM606291   
Gene and transcription
Genbank (Entrez)AF152324 AF152511 AI805761 BC152812 BC156730
RefSeq transcript (Entrez)NM_018917 NM_032053
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHGA4
Cluster EST : UnigeneHs.368160 [ NCBI ]
CGAP (NCI)Hs.368160
Alternative Splicing GalleryENSG00000262576
Gene ExpressionPCDHGA4 [ NCBI-GEO ]   PCDHGA4 [ EBI - ARRAY_EXPRESS ]   PCDHGA4 [ SEEK ]   PCDHGA4 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHGA4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56111
GTEX Portal (Tissue expression)PCDHGA4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5G9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5G9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5G9
Splice isoforms : SwissVarQ9Y5G9
PhosPhoSitePlusQ9Y5G9
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_C    Cadherin_CBD    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_C_2 (PF16492)    Cadherin_tail (PF15974)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam16492    pfam15974   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHGA4
DMDM Disease mutations56111
Blocks (Seattle)PCDHGA4
SuperfamilyQ9Y5G9
Human Protein AtlasENSG00000262576
Peptide AtlasQ9Y5G9
HPRD09381
IPIIPI00003884   IPI00012522   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5G9
IntAct (EBI)Q9Y5G9
FunCoupENSG00000262576
BioGRIDPCDHGA4
STRING (EMBL)PCDHGA4
ZODIACPCDHGA4
Ontologies - Pathways
QuickGOQ9Y5G9
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
NDEx NetworkPCDHGA4
Atlas of Cancer Signalling NetworkPCDHGA4
Wikipedia pathwaysPCDHGA4
Orthology - Evolution
OrthoDB56111
GeneTree (enSembl)ENSG00000262576
Phylogenetic Trees/Animal Genes : TreeFamPCDHGA4
HOVERGENQ9Y5G9
HOGENOMQ9Y5G9
Homologs : HomoloGenePCDHGA4
Homology/Alignments : Family Browser (UCSC)PCDHGA4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHGA4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHGA4
dbVarPCDHGA4
ClinVarPCDHGA4
1000_GenomesPCDHGA4 
Exome Variant ServerPCDHGA4
ExAC (Exome Aggregation Consortium)PCDHGA4 (select the gene name)
Genetic variants : HAPMAP56111
Genomic Variants (DGV)PCDHGA4 [DGVbeta]
DECIPHERPCDHGA4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDHGA4 
Mutations
ICGC Data PortalPCDHGA4 
TCGA Data PortalPCDHGA4 
Broad Tumor PortalPCDHGA4
OASIS PortalPCDHGA4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHGA4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHGA4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHGA4
DgiDB (Drug Gene Interaction Database)PCDHGA4
DoCM (Curated mutations)PCDHGA4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHGA4 (select a term)
intoGenPCDHGA4
Cancer3DPCDHGA4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606291   
Orphanet
MedgenPCDHGA4
Genetic Testing Registry PCDHGA4
NextProtQ9Y5G9 [Medical]
TSGene56111
GENETestsPCDHGA4
Target ValidationPCDHGA4
Huge Navigator PCDHGA4 [HugePedia]
snp3D : Map Gene to Disease56111
BioCentury BCIQPCDHGA4
ClinGenPCDHGA4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56111
Chemical/Pharm GKB GenePA33050
Clinical trialPCDHGA4
Miscellaneous
canSAR (ICR)PCDHGA4 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHGA4
EVEXPCDHGA4
GoPubMedPCDHGA4
iHOPPCDHGA4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:07 CEST 2017

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