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PCDHGA5 (protocadherin gamma subfamily A, 5)

Identity

Alias_symbol (synonym)CDH-GAMMA-A5
ME3
PCDH-GAMMA-A5
Other alias
HGNC (Hugo) PCDHGA5
LocusID (NCBI) 56110
Atlas_Id 41665
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141364331 and ends at 141512979 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHGA5   8703
Cards
Entrez_Gene (NCBI)PCDHGA5  56110  protocadherin gamma subfamily A, 5
AliasesCDH-GAMMA-A5; ME3; PCDH-GAMMA-A5
GeneCards (Weizmann)PCDHGA5
Ensembl hg19 (Hinxton)ENSG00000253485 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253485 [Gene_View]  chr5:141364331-141512979 [Contig_View]  PCDHGA5 [Vega]
ICGC DataPortalENSG00000253485
TCGA cBioPortalPCDHGA5
AceView (NCBI)PCDHGA5
Genatlas (Paris)PCDHGA5
WikiGenes56110
SOURCE (Princeton)PCDHGA5
Genetics Home Reference (NIH)PCDHGA5
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHGA5  -     chr5:141364331-141512979 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHGA5  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHGA5 - 5q31.3 [CytoView hg19]  PCDHGA5 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHGA5 [Mapview hg19]  PCDHGA5 [Mapview hg38]
OMIM606292   
Gene and transcription
Genbank (Entrez)AF152325 AF152512 BC104926 BC113460 D88796
RefSeq transcript (Entrez)NM_018918 NM_032054
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHGA5
Cluster EST : UnigeneHs.368160 [ NCBI ]
CGAP (NCI)Hs.368160
Alternative Splicing GalleryENSG00000253485
Gene ExpressionPCDHGA5 [ NCBI-GEO ]   PCDHGA5 [ EBI - ARRAY_EXPRESS ]   PCDHGA5 [ SEEK ]   PCDHGA5 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHGA5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56110
GTEX Portal (Tissue expression)PCDHGA5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5G8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5G8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5G8
Splice isoforms : SwissVarQ9Y5G8
PhosPhoSitePlusQ9Y5G8
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_C    Cadherin_CBD    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_C_2 (PF16492)    Cadherin_tail (PF15974)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam16492    pfam15974   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHGA5
DMDM Disease mutations56110
Blocks (Seattle)PCDHGA5
SuperfamilyQ9Y5G8
Human Protein AtlasENSG00000253485
Peptide AtlasQ9Y5G8
HPRD09382
IPIIPI00003885   IPI00012523   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5G8
IntAct (EBI)Q9Y5G8
FunCoupENSG00000253485
BioGRIDPCDHGA5
STRING (EMBL)PCDHGA5
ZODIACPCDHGA5
Ontologies - Pathways
QuickGOQ9Y5G8
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
NDEx NetworkPCDHGA5
Atlas of Cancer Signalling NetworkPCDHGA5
Wikipedia pathwaysPCDHGA5
Orthology - Evolution
OrthoDB56110
GeneTree (enSembl)ENSG00000253485
Phylogenetic Trees/Animal Genes : TreeFamPCDHGA5
HOVERGENQ9Y5G8
HOGENOMQ9Y5G8
Homologs : HomoloGenePCDHGA5
Homology/Alignments : Family Browser (UCSC)PCDHGA5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHGA5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHGA5
dbVarPCDHGA5
ClinVarPCDHGA5
1000_GenomesPCDHGA5 
Exome Variant ServerPCDHGA5
ExAC (Exome Aggregation Consortium)PCDHGA5 (select the gene name)
Genetic variants : HAPMAP56110
Genomic Variants (DGV)PCDHGA5 [DGVbeta]
DECIPHERPCDHGA5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDHGA5 
Mutations
ICGC Data PortalPCDHGA5 
TCGA Data PortalPCDHGA5 
Broad Tumor PortalPCDHGA5
OASIS PortalPCDHGA5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHGA5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHGA5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHGA5
DgiDB (Drug Gene Interaction Database)PCDHGA5
DoCM (Curated mutations)PCDHGA5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHGA5 (select a term)
intoGenPCDHGA5
Cancer3DPCDHGA5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606292   
Orphanet
MedgenPCDHGA5
Genetic Testing Registry PCDHGA5
NextProtQ9Y5G8 [Medical]
TSGene56110
GENETestsPCDHGA5
Target ValidationPCDHGA5
Huge Navigator PCDHGA5 [HugePedia]
snp3D : Map Gene to Disease56110
BioCentury BCIQPCDHGA5
ClinGenPCDHGA5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56110
Chemical/Pharm GKB GenePA33051
Clinical trialPCDHGA5
Miscellaneous
canSAR (ICR)PCDHGA5 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHGA5
EVEXPCDHGA5
GoPubMedPCDHGA5
iHOPPCDHGA5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:10:13 CEST 2017

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