Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PCDHGA6 (protocadherin gamma subfamily A, 6)

Identity

Alias_symbol (synonym)PCDH-GAMMA-A6
Other alias
HGNC (Hugo) PCDHGA6
LocusID (NCBI) 56109
Atlas_Id 71743
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141374084 and ends at 141512979 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHGA6   8704
Cards
Entrez_Gene (NCBI)PCDHGA6  56109  protocadherin gamma subfamily A, 6
AliasesPCDH-GAMMA-A6
GeneCards (Weizmann)PCDHGA6
Ensembl hg19 (Hinxton)ENSG00000253731 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253731 [Gene_View]  chr5:141374084-141512979 [Contig_View]  PCDHGA6 [Vega]
ICGC DataPortalENSG00000253731
TCGA cBioPortalPCDHGA6
AceView (NCBI)PCDHGA6
Genatlas (Paris)PCDHGA6
WikiGenes56109
SOURCE (Princeton)PCDHGA6
Genetics Home Reference (NIH)PCDHGA6
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHGA6  -     chr5:141374084-141512979 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHGA6  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHGA6 - 5q31.3 [CytoView hg19]  PCDHGA6 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHGA6 [Mapview hg19]  PCDHGA6 [Mapview hg38]
OMIM606293   
Gene and transcription
Genbank (Entrez)AB209178 AF152326 AF152513 BC109240 BC136702
RefSeq transcript (Entrez)NM_018919 NM_032086
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHGA6
Cluster EST : UnigeneHs.368160 [ NCBI ]
CGAP (NCI)Hs.368160
Alternative Splicing GalleryENSG00000253731
Gene ExpressionPCDHGA6 [ NCBI-GEO ]   PCDHGA6 [ EBI - ARRAY_EXPRESS ]   PCDHGA6 [ SEEK ]   PCDHGA6 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHGA6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56109
GTEX Portal (Tissue expression)PCDHGA6
Human Protein AtlasENSG00000253731-PCDHGA6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5G7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5G7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5G7
Splice isoforms : SwissVarQ9Y5G7
PhosPhoSitePlusQ9Y5G7
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_C    Cadherin_CBD    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_C_2 (PF16492)    Cadherin_tail (PF15974)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam16492    pfam15974   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHGA6
DMDM Disease mutations56109
Blocks (Seattle)PCDHGA6
SuperfamilyQ9Y5G7
Human Protein Atlas [tissue]ENSG00000253731-PCDHGA6 [tissue]
Peptide AtlasQ9Y5G7
HPRD09383
IPIIPI00003887   IPI00012541   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5G7
IntAct (EBI)Q9Y5G7
FunCoupENSG00000253731
BioGRIDPCDHGA6
STRING (EMBL)PCDHGA6
ZODIACPCDHGA6
Ontologies - Pathways
QuickGOQ9Y5G7
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
NDEx NetworkPCDHGA6
Atlas of Cancer Signalling NetworkPCDHGA6
Wikipedia pathwaysPCDHGA6
Orthology - Evolution
OrthoDB56109
GeneTree (enSembl)ENSG00000253731
Phylogenetic Trees/Animal Genes : TreeFamPCDHGA6
HOVERGENQ9Y5G7
HOGENOMQ9Y5G7
Homologs : HomoloGenePCDHGA6
Homology/Alignments : Family Browser (UCSC)PCDHGA6
Gene fusions - Rearrangements
Fusion: Tumor Portal PCDHGA6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHGA6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHGA6
dbVarPCDHGA6
ClinVarPCDHGA6
1000_GenomesPCDHGA6 
Exome Variant ServerPCDHGA6
ExAC (Exome Aggregation Consortium)ENSG00000253731
GNOMAD BrowserENSG00000253731
Genetic variants : HAPMAP56109
Genomic Variants (DGV)PCDHGA6 [DGVbeta]
DECIPHERPCDHGA6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDHGA6 
Mutations
ICGC Data PortalPCDHGA6 
TCGA Data PortalPCDHGA6 
Broad Tumor PortalPCDHGA6
OASIS PortalPCDHGA6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHGA6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHGA6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHGA6
DgiDB (Drug Gene Interaction Database)PCDHGA6
DoCM (Curated mutations)PCDHGA6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHGA6 (select a term)
intoGenPCDHGA6
Cancer3DPCDHGA6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606293   
Orphanet
MedgenPCDHGA6
Genetic Testing Registry PCDHGA6
NextProtQ9Y5G7 [Medical]
TSGene56109
GENETestsPCDHGA6
Target ValidationPCDHGA6
Huge Navigator PCDHGA6 [HugePedia]
snp3D : Map Gene to Disease56109
BioCentury BCIQPCDHGA6
ClinGenPCDHGA6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56109
Chemical/Pharm GKB GenePA33052
Clinical trialPCDHGA6
Miscellaneous
canSAR (ICR)PCDHGA6 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHGA6
EVEXPCDHGA6
GoPubMedPCDHGA6
iHOPPCDHGA6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:21:59 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.