Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PCDHGA7 (protocadherin gamma subfamily A, 7)

Identity

Alias_symbol (synonym)PCDH-GAMMA-A7
Other alias
HGNC (Hugo) PCDHGA7
LocusID (NCBI) 56108
Atlas_Id 71744
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140762306 and ends at 140892546 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHGA7   8705
Cards
Entrez_Gene (NCBI)PCDHGA7  56108  protocadherin gamma subfamily A, 7
AliasesPCDH-GAMMA-A7
GeneCards (Weizmann)PCDHGA7
Ensembl hg19 (Hinxton)ENSG00000253537 [Gene_View]  chr5:140762306-140892546 [Contig_View]  PCDHGA7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000253537 [Gene_View]  chr5:140762306-140892546 [Contig_View]  PCDHGA7 [Vega]
ICGC DataPortalENSG00000253537
TCGA cBioPortalPCDHGA7
AceView (NCBI)PCDHGA7
Genatlas (Paris)PCDHGA7
WikiGenes56108
SOURCE (Princeton)PCDHGA7
Genetics Home Reference (NIH)PCDHGA7
Genomic and cartography
GoldenPath hg19 (UCSC)PCDHGA7  -     chr5:140762306-140892546 +  5q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PCDHGA7  -     5q31.3   [Description]    (hg38-Dec_2013)
EnsemblPCDHGA7 - 5q31.3 [CytoView hg19]  PCDHGA7 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHGA7 [Mapview hg19]  PCDHGA7 [Mapview hg38]
OMIM606294   
Gene and transcription
Genbank (Entrez)AB208958 AF152327 AF152514 BC136747 BC136748
RefSeq transcript (Entrez)NM_018920 NM_032087
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_000012 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)PCDHGA7
Cluster EST : UnigeneHs.368160 [ NCBI ]
CGAP (NCI)Hs.368160
Alternative Splicing GalleryENSG00000253537
Gene ExpressionPCDHGA7 [ NCBI-GEO ]   PCDHGA7 [ EBI - ARRAY_EXPRESS ]   PCDHGA7 [ SEEK ]   PCDHGA7 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHGA7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56108
GTEX Portal (Tissue expression)PCDHGA7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5G6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5G6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5G6
Splice isoforms : SwissVarQ9Y5G6
PhosPhoSitePlusQ9Y5G6
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)   
Domain families : Pfam (NCBI)pfam00028    pfam08266   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHGA7
DMDM Disease mutations56108
Blocks (Seattle)PCDHGA7
SuperfamilyQ9Y5G6
Human Protein AtlasENSG00000253537
Peptide AtlasQ9Y5G6
HPRD09384
IPIIPI00003888   IPI00012542   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5G6
IntAct (EBI)Q9Y5G6
FunCoupENSG00000253537
BioGRIDPCDHGA7
STRING (EMBL)PCDHGA7
ZODIACPCDHGA7
Ontologies - Pathways
QuickGOQ9Y5G6
Ontology : AmiGOcalcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  
Ontology : EGO-EBIcalcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  
NDEx NetworkPCDHGA7
Atlas of Cancer Signalling NetworkPCDHGA7
Wikipedia pathwaysPCDHGA7
Orthology - Evolution
OrthoDB56108
GeneTree (enSembl)ENSG00000253537
Phylogenetic Trees/Animal Genes : TreeFamPCDHGA7
HOVERGENQ9Y5G6
HOGENOMQ9Y5G6
Homologs : HomoloGenePCDHGA7
Homology/Alignments : Family Browser (UCSC)PCDHGA7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHGA7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHGA7
dbVarPCDHGA7
ClinVarPCDHGA7
1000_GenomesPCDHGA7 
Exome Variant ServerPCDHGA7
ExAC (Exome Aggregation Consortium)PCDHGA7 (select the gene name)
Genetic variants : HAPMAP56108
Genomic Variants (DGV)PCDHGA7 [DGVbeta]
DECIPHER (Syndromes)5:140762306-140892546  ENSG00000253537
CONAN: Copy Number AnalysisPCDHGA7 
Mutations
ICGC Data PortalPCDHGA7 
TCGA Data PortalPCDHGA7 
Broad Tumor PortalPCDHGA7
OASIS PortalPCDHGA7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHGA7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHGA7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHGA7
DgiDB (Drug Gene Interaction Database)PCDHGA7
DoCM (Curated mutations)PCDHGA7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHGA7 (select a term)
intoGenPCDHGA7
Cancer3DPCDHGA7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606294   
Orphanet
MedgenPCDHGA7
Genetic Testing Registry PCDHGA7
NextProtQ9Y5G6 [Medical]
TSGene56108
GENETestsPCDHGA7
Huge Navigator PCDHGA7 [HugePedia]
snp3D : Map Gene to Disease56108
BioCentury BCIQPCDHGA7
ClinGenPCDHGA7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56108
Chemical/Pharm GKB GenePA33053
Clinical trialPCDHGA7
Miscellaneous
canSAR (ICR)PCDHGA7 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHGA7
EVEXPCDHGA7
GoPubMedPCDHGA7
iHOPPCDHGA7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:38:04 CET 2017

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