Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PCDHGA8 (protocadherin gamma subfamily A, 8)

Identity

Alias_symbol (synonym)KIAA0327
PCDH-GAMMA-A8
Other alias
HGNC (Hugo) PCDHGA8
LocusID (NCBI) 9708
Atlas_Id 71745
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141391916 and ends at 141395403 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHGA8   8706
Cards
Entrez_Gene (NCBI)PCDHGA8  9708  protocadherin gamma subfamily A, 8
AliasesPCDH-GAMMA-A8
GeneCards (Weizmann)PCDHGA8
Ensembl hg19 (Hinxton)ENSG00000253767 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253767 [Gene_View]  chr5:141391916-141395403 [Contig_View]  PCDHGA8 [Vega]
ICGC DataPortalENSG00000253767
TCGA cBioPortalPCDHGA8
AceView (NCBI)PCDHGA8
Genatlas (Paris)PCDHGA8
WikiGenes9708
SOURCE (Princeton)PCDHGA8
Genetics Home Reference (NIH)PCDHGA8
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHGA8  -     chr5:141391916-141395403 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHGA8  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHGA8 - 5q31.3 [CytoView hg19]  PCDHGA8 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHGA8 [Mapview hg19]  PCDHGA8 [Mapview hg38]
OMIM606295   
Gene and transcription
Genbank (Entrez)AB002325 AF152328 AF152515 BC152415 BC160101
RefSeq transcript (Entrez)NM_014004 NM_032088
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHGA8
Cluster EST : UnigeneHs.368160 [ NCBI ]
CGAP (NCI)Hs.368160
Alternative Splicing GalleryENSG00000253767
Gene ExpressionPCDHGA8 [ NCBI-GEO ]   PCDHGA8 [ EBI - ARRAY_EXPRESS ]   PCDHGA8 [ SEEK ]   PCDHGA8 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHGA8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9708
GTEX Portal (Tissue expression)PCDHGA8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5G5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5G5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5G5
Splice isoforms : SwissVarQ9Y5G5
PhosPhoSitePlusQ9Y5G5
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_C    Cadherin_CBD    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_C_2 (PF16492)    Cadherin_tail (PF15974)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam16492    pfam15974   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHGA8
DMDM Disease mutations9708
Blocks (Seattle)PCDHGA8
SuperfamilyQ9Y5G5
Human Protein AtlasENSG00000253767
Peptide AtlasQ9Y5G5
HPRD09385
IPIIPI00012543   IPI00022259   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5G5
IntAct (EBI)Q9Y5G5
FunCoupENSG00000253767
BioGRIDPCDHGA8
STRING (EMBL)PCDHGA8
ZODIACPCDHGA8
Ontologies - Pathways
QuickGOQ9Y5G5
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
NDEx NetworkPCDHGA8
Atlas of Cancer Signalling NetworkPCDHGA8
Wikipedia pathwaysPCDHGA8
Orthology - Evolution
OrthoDB9708
GeneTree (enSembl)ENSG00000253767
Phylogenetic Trees/Animal Genes : TreeFamPCDHGA8
HOVERGENQ9Y5G5
HOGENOMQ9Y5G5
Homologs : HomoloGenePCDHGA8
Homology/Alignments : Family Browser (UCSC)PCDHGA8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHGA8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHGA8
dbVarPCDHGA8
ClinVarPCDHGA8
1000_GenomesPCDHGA8 
Exome Variant ServerPCDHGA8
ExAC (Exome Aggregation Consortium)PCDHGA8 (select the gene name)
Genetic variants : HAPMAP9708
Genomic Variants (DGV)PCDHGA8 [DGVbeta]
DECIPHERPCDHGA8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDHGA8 
Mutations
ICGC Data PortalPCDHGA8 
TCGA Data PortalPCDHGA8 
Broad Tumor PortalPCDHGA8
OASIS PortalPCDHGA8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHGA8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHGA8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHGA8
DgiDB (Drug Gene Interaction Database)PCDHGA8
DoCM (Curated mutations)PCDHGA8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHGA8 (select a term)
intoGenPCDHGA8
Cancer3DPCDHGA8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606295   
Orphanet
MedgenPCDHGA8
Genetic Testing Registry PCDHGA8
NextProtQ9Y5G5 [Medical]
TSGene9708
GENETestsPCDHGA8
Target ValidationPCDHGA8
Huge Navigator PCDHGA8 [HugePedia]
snp3D : Map Gene to Disease9708
BioCentury BCIQPCDHGA8
ClinGenPCDHGA8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9708
Chemical/Pharm GKB GenePA33054
Clinical trialPCDHGA8
Miscellaneous
canSAR (ICR)PCDHGA8 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHGA8
EVEXPCDHGA8
GoPubMedPCDHGA8
iHOPPCDHGA8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:34:08 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.