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PCDHGA9 (protocadherin gamma subfamily A, 9)

Identity

Alias_symbol (synonym)PCDH-GAMMA-A9
Other alias
HGNC (Hugo) PCDHGA9
LocusID (NCBI) 56107
Atlas_Id 71746
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141402953 and ends at 141512979 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHGA9   8707
Cards
Entrez_Gene (NCBI)PCDHGA9  56107  protocadherin gamma subfamily A, 9
AliasesPCDH-GAMMA-A9
GeneCards (Weizmann)PCDHGA9
Ensembl hg19 (Hinxton)ENSG00000261934 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000261934 [Gene_View]  chr5:141402953-141512979 [Contig_View]  PCDHGA9 [Vega]
ICGC DataPortalENSG00000261934
TCGA cBioPortalPCDHGA9
AceView (NCBI)PCDHGA9
Genatlas (Paris)PCDHGA9
WikiGenes56107
SOURCE (Princeton)PCDHGA9
Genetics Home Reference (NIH)PCDHGA9
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHGA9  -     chr5:141402953-141512979 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHGA9  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHGA9 - 5q31.3 [CytoView hg19]  PCDHGA9 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHGA9 [Mapview hg19]  PCDHGA9 [Mapview hg38]
OMIM606296   
Gene and transcription
Genbank (Entrez)AF152329 AF152516 BC132769
RefSeq transcript (Entrez)NM_018921 NM_032089
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHGA9
Cluster EST : UnigeneHs.368160 [ NCBI ]
CGAP (NCI)Hs.368160
Alternative Splicing GalleryENSG00000261934
Gene ExpressionPCDHGA9 [ NCBI-GEO ]   PCDHGA9 [ EBI - ARRAY_EXPRESS ]   PCDHGA9 [ SEEK ]   PCDHGA9 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHGA9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56107
GTEX Portal (Tissue expression)PCDHGA9
Human Protein AtlasENSG00000261934-PCDHGA9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5G4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5G4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5G4
Splice isoforms : SwissVarQ9Y5G4
PhosPhoSitePlusQ9Y5G4
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_C    Cadherin_CBD    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_C_2 (PF16492)    Cadherin_tail (PF15974)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam16492    pfam15974   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHGA9
DMDM Disease mutations56107
Blocks (Seattle)PCDHGA9
SuperfamilyQ9Y5G4
Human Protein Atlas [tissue]ENSG00000261934-PCDHGA9 [tissue]
Peptide AtlasQ9Y5G4
HPRD09386
IPIIPI00003889   IPI00012544   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5G4
IntAct (EBI)Q9Y5G4
FunCoupENSG00000261934
BioGRIDPCDHGA9
STRING (EMBL)PCDHGA9
ZODIACPCDHGA9
Ontologies - Pathways
QuickGOQ9Y5G4
Ontology : AmiGORNA binding  calcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  spermatogenesis  nervous system development  
Ontology : EGO-EBIRNA binding  calcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  spermatogenesis  nervous system development  
NDEx NetworkPCDHGA9
Atlas of Cancer Signalling NetworkPCDHGA9
Wikipedia pathwaysPCDHGA9
Orthology - Evolution
OrthoDB56107
GeneTree (enSembl)ENSG00000261934
Phylogenetic Trees/Animal Genes : TreeFamPCDHGA9
HOVERGENQ9Y5G4
HOGENOMQ9Y5G4
Homologs : HomoloGenePCDHGA9
Homology/Alignments : Family Browser (UCSC)PCDHGA9
Gene fusions - Rearrangements
Fusion: Tumor Portal PCDHGA9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHGA9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHGA9
dbVarPCDHGA9
ClinVarPCDHGA9
1000_GenomesPCDHGA9 
Exome Variant ServerPCDHGA9
ExAC (Exome Aggregation Consortium)ENSG00000261934
GNOMAD BrowserENSG00000261934
Genetic variants : HAPMAP56107
Genomic Variants (DGV)PCDHGA9 [DGVbeta]
DECIPHERPCDHGA9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDHGA9 
Mutations
ICGC Data PortalPCDHGA9 
TCGA Data PortalPCDHGA9 
Broad Tumor PortalPCDHGA9
OASIS PortalPCDHGA9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHGA9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHGA9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHGA9
DgiDB (Drug Gene Interaction Database)PCDHGA9
DoCM (Curated mutations)PCDHGA9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHGA9 (select a term)
intoGenPCDHGA9
Cancer3DPCDHGA9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606296   
Orphanet
MedgenPCDHGA9
Genetic Testing Registry PCDHGA9
NextProtQ9Y5G4 [Medical]
TSGene56107
GENETestsPCDHGA9
Target ValidationPCDHGA9
Huge Navigator PCDHGA9 [HugePedia]
snp3D : Map Gene to Disease56107
BioCentury BCIQPCDHGA9
ClinGenPCDHGA9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56107
Chemical/Pharm GKB GenePA33055
Clinical trialPCDHGA9
Miscellaneous
canSAR (ICR)PCDHGA9 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHGA9
EVEXPCDHGA9
GoPubMedPCDHGA9
iHOPPCDHGA9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:21:59 CET 2017

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