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PCDHGB2 (protocadherin gamma subfamily B, 2)

Identity

Alias_symbol (synonym)PCDH-GAMMA-B2
Other alias
HGNC (Hugo) PCDHGB2
LocusID (NCBI) 56103
Atlas_Id 71748
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141360136 and ends at 141512979 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHGB2   8709
Cards
Entrez_Gene (NCBI)PCDHGB2  56103  protocadherin gamma subfamily B, 2
AliasesPCDH-GAMMA-B2
GeneCards (Weizmann)PCDHGB2
Ensembl hg19 (Hinxton)ENSG00000253910 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253910 [Gene_View]  chr5:141360136-141512979 [Contig_View]  PCDHGB2 [Vega]
ICGC DataPortalENSG00000253910
TCGA cBioPortalPCDHGB2
AceView (NCBI)PCDHGB2
Genatlas (Paris)PCDHGB2
WikiGenes56103
SOURCE (Princeton)PCDHGB2
Genetics Home Reference (NIH)PCDHGB2
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHGB2  -     chr5:141360136-141512979 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHGB2  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHGB2 - 5q31.3 [CytoView hg19]  PCDHGB2 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHGB2 [Mapview hg19]  PCDHGB2 [Mapview hg38]
OMIM606300   
Gene and transcription
Genbank (Entrez)AF152331 AF152518 BC101805
RefSeq transcript (Entrez)NM_018923 NM_032096
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHGB2
Cluster EST : UnigeneHs.368160 [ NCBI ]
CGAP (NCI)Hs.368160
Alternative Splicing GalleryENSG00000253910
Gene ExpressionPCDHGB2 [ NCBI-GEO ]   PCDHGB2 [ EBI - ARRAY_EXPRESS ]   PCDHGB2 [ SEEK ]   PCDHGB2 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHGB2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56103
GTEX Portal (Tissue expression)PCDHGB2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5G2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5G2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5G2
Splice isoforms : SwissVarQ9Y5G2
PhosPhoSitePlusQ9Y5G2
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_C    Cadherin_CBD    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_C_2 (PF16492)    Cadherin_tail (PF15974)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam16492    pfam15974   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHGB2
DMDM Disease mutations56103
Blocks (Seattle)PCDHGB2
SuperfamilyQ9Y5G2
Human Protein AtlasENSG00000253910
Peptide AtlasQ9Y5G2
HPRD09390
IPIIPI00215842   IPI00028616   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5G2
IntAct (EBI)Q9Y5G2
FunCoupENSG00000253910
BioGRIDPCDHGB2
STRING (EMBL)PCDHGB2
ZODIACPCDHGB2
Ontologies - Pathways
QuickGOQ9Y5G2
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
NDEx NetworkPCDHGB2
Atlas of Cancer Signalling NetworkPCDHGB2
Wikipedia pathwaysPCDHGB2
Orthology - Evolution
OrthoDB56103
GeneTree (enSembl)ENSG00000253910
Phylogenetic Trees/Animal Genes : TreeFamPCDHGB2
HOVERGENQ9Y5G2
HOGENOMQ9Y5G2
Homologs : HomoloGenePCDHGB2
Homology/Alignments : Family Browser (UCSC)PCDHGB2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHGB2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHGB2
dbVarPCDHGB2
ClinVarPCDHGB2
1000_GenomesPCDHGB2 
Exome Variant ServerPCDHGB2
ExAC (Exome Aggregation Consortium)PCDHGB2 (select the gene name)
Genetic variants : HAPMAP56103
Genomic Variants (DGV)PCDHGB2 [DGVbeta]
DECIPHERPCDHGB2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDHGB2 
Mutations
ICGC Data PortalPCDHGB2 
TCGA Data PortalPCDHGB2 
Broad Tumor PortalPCDHGB2
OASIS PortalPCDHGB2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHGB2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHGB2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHGB2
DgiDB (Drug Gene Interaction Database)PCDHGB2
DoCM (Curated mutations)PCDHGB2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHGB2 (select a term)
intoGenPCDHGB2
Cancer3DPCDHGB2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606300   
Orphanet
MedgenPCDHGB2
Genetic Testing Registry PCDHGB2
NextProtQ9Y5G2 [Medical]
TSGene56103
GENETestsPCDHGB2
Target ValidationPCDHGB2
Huge Navigator PCDHGB2 [HugePedia]
snp3D : Map Gene to Disease56103
BioCentury BCIQPCDHGB2
ClinGenPCDHGB2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56103
Chemical/Pharm GKB GenePA33057
Clinical trialPCDHGB2
Miscellaneous
canSAR (ICR)PCDHGB2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHGB2
EVEXPCDHGB2
GoPubMedPCDHGB2
iHOPPCDHGB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:48 CEST 2017

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