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PCDHGB3 (protocadherin gamma subfamily B, 3)

Identity

Alias_symbol (synonym)PCDH-GAMMA-B3
Other alias
HGNC (Hugo) PCDHGB3
LocusID (NCBI) 56102
Atlas_Id 71749
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141370264 and ends at 141512979 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHGB3   8710
Cards
Entrez_Gene (NCBI)PCDHGB3  56102  protocadherin gamma subfamily B, 3
AliasesPCDH-GAMMA-B3
GeneCards (Weizmann)PCDHGB3
Ensembl hg19 (Hinxton)ENSG00000262209 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000262209 [Gene_View]  chr5:141370264-141512979 [Contig_View]  PCDHGB3 [Vega]
ICGC DataPortalENSG00000262209
TCGA cBioPortalPCDHGB3
AceView (NCBI)PCDHGB3
Genatlas (Paris)PCDHGB3
WikiGenes56102
SOURCE (Princeton)PCDHGB3
Genetics Home Reference (NIH)PCDHGB3
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHGB3  -     chr5:141370264-141512979 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHGB3  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHGB3 - 5q31.3 [CytoView hg19]  PCDHGB3 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHGB3 [Mapview hg19]  PCDHGB3 [Mapview hg38]
OMIM606301   
Gene and transcription
Genbank (Entrez)AF152332 AF152519 AW136795 BC150172
RefSeq transcript (Entrez)NM_018924 NM_032097
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHGB3
Cluster EST : UnigeneHs.368160 [ NCBI ]
CGAP (NCI)Hs.368160
Alternative Splicing GalleryENSG00000262209
Gene ExpressionPCDHGB3 [ NCBI-GEO ]   PCDHGB3 [ EBI - ARRAY_EXPRESS ]   PCDHGB3 [ SEEK ]   PCDHGB3 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHGB3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56102
GTEX Portal (Tissue expression)PCDHGB3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5G1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5G1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5G1
Splice isoforms : SwissVarQ9Y5G1
PhosPhoSitePlusQ9Y5G1
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_C    Cadherin_CBD    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_C_2 (PF16492)    Cadherin_tail (PF15974)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam16492    pfam15974   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHGB3
DMDM Disease mutations56102
Blocks (Seattle)PCDHGB3
PDB (SRS)5K8R   
PDB (PDBSum)5K8R   
PDB (IMB)5K8R   
PDB (RSDB)5K8R   
Structural Biology KnowledgeBase5K8R   
SCOP (Structural Classification of Proteins)5K8R   
CATH (Classification of proteins structures)5K8R   
SuperfamilyQ9Y5G1
Human Protein AtlasENSG00000262209
Peptide AtlasQ9Y5G1
HPRD09391
IPIIPI00003893   IPI00028617   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5G1
IntAct (EBI)Q9Y5G1
FunCoupENSG00000262209
BioGRIDPCDHGB3
STRING (EMBL)PCDHGB3
ZODIACPCDHGB3
Ontologies - Pathways
QuickGOQ9Y5G1
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
NDEx NetworkPCDHGB3
Atlas of Cancer Signalling NetworkPCDHGB3
Wikipedia pathwaysPCDHGB3
Orthology - Evolution
OrthoDB56102
GeneTree (enSembl)ENSG00000262209
Phylogenetic Trees/Animal Genes : TreeFamPCDHGB3
HOVERGENQ9Y5G1
HOGENOMQ9Y5G1
Homologs : HomoloGenePCDHGB3
Homology/Alignments : Family Browser (UCSC)PCDHGB3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHGB3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHGB3
dbVarPCDHGB3
ClinVarPCDHGB3
1000_GenomesPCDHGB3 
Exome Variant ServerPCDHGB3
ExAC (Exome Aggregation Consortium)PCDHGB3 (select the gene name)
Genetic variants : HAPMAP56102
Genomic Variants (DGV)PCDHGB3 [DGVbeta]
DECIPHERPCDHGB3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDHGB3 
Mutations
ICGC Data PortalPCDHGB3 
TCGA Data PortalPCDHGB3 
Broad Tumor PortalPCDHGB3
OASIS PortalPCDHGB3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHGB3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHGB3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHGB3
DgiDB (Drug Gene Interaction Database)PCDHGB3
DoCM (Curated mutations)PCDHGB3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHGB3 (select a term)
intoGenPCDHGB3
Cancer3DPCDHGB3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606301   
Orphanet
MedgenPCDHGB3
Genetic Testing Registry PCDHGB3
NextProtQ9Y5G1 [Medical]
TSGene56102
GENETestsPCDHGB3
Target ValidationPCDHGB3
Huge Navigator PCDHGB3 [HugePedia]
snp3D : Map Gene to Disease56102
BioCentury BCIQPCDHGB3
ClinGenPCDHGB3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56102
Chemical/Pharm GKB GenePA33058
Clinical trialPCDHGB3
Miscellaneous
canSAR (ICR)PCDHGB3 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHGB3
EVEXPCDHGB3
GoPubMedPCDHGB3
iHOPPCDHGB3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:08 CEST 2017

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