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PCDHGB4 (protocadherin gamma subfamily B, 4)

Identity

Alias_symbol (synonym)FIB2
CDH20
PCDH-GAMMA-B4
Other alias
HGNC (Hugo) PCDHGB4
LocusID (NCBI) 8641
Atlas_Id 71750
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140767452 and ends at 140892546 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHGB4   8711
Cards
Entrez_Gene (NCBI)PCDHGB4  8641  protocadherin gamma subfamily B, 4
AliasesCDH20; FIB2; PCDH-GAMMA-B4
GeneCards (Weizmann)PCDHGB4
Ensembl hg19 (Hinxton)ENSG00000253953 [Gene_View]  chr5:140767452-140892546 [Contig_View]  PCDHGB4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000253953 [Gene_View]  chr5:140767452-140892546 [Contig_View]  PCDHGB4 [Vega]
ICGC DataPortalENSG00000253953
TCGA cBioPortalPCDHGB4
AceView (NCBI)PCDHGB4
Genatlas (Paris)PCDHGB4
WikiGenes8641
SOURCE (Princeton)PCDHGB4
Genetics Home Reference (NIH)PCDHGB4
Genomic and cartography
GoldenPath hg19 (UCSC)PCDHGB4  -     chr5:140767452-140892546 +  5q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PCDHGB4  -     5q31.3   [Description]    (hg38-Dec_2013)
EnsemblPCDHGB4 - 5q31.3 [CytoView hg19]  PCDHGB4 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHGB4 [Mapview hg19]  PCDHGB4 [Mapview hg38]
OMIM603058   
Gene and transcription
Genbank (Entrez)AB000896 AF152333 AF152520 BC112088 BC113607
RefSeq transcript (Entrez)NM_003736 NM_032098
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_000012 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)PCDHGB4
Cluster EST : UnigeneHs.368160 [ NCBI ]
CGAP (NCI)Hs.368160
Alternative Splicing GalleryENSG00000253953
Gene ExpressionPCDHGB4 [ NCBI-GEO ]   PCDHGB4 [ EBI - ARRAY_EXPRESS ]   PCDHGB4 [ SEEK ]   PCDHGB4 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHGB4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8641
GTEX Portal (Tissue expression)PCDHGB4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UN71   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UN71  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UN71
Splice isoforms : SwissVarQ9UN71
PhosPhoSitePlusQ9UN71
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)   
Domain families : Pfam (NCBI)pfam00028    pfam08266   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHGB4
DMDM Disease mutations8641
Blocks (Seattle)PCDHGB4
SuperfamilyQ9UN71
Human Protein AtlasENSG00000253953
Peptide AtlasQ9UN71
HPRD07215
IPIIPI00216623   IPI00028619   
Protein Interaction databases
DIP (DOE-UCLA)Q9UN71
IntAct (EBI)Q9UN71
FunCoupENSG00000253953
BioGRIDPCDHGB4
STRING (EMBL)PCDHGB4
ZODIACPCDHGB4
Ontologies - Pathways
QuickGOQ9UN71
Ontology : AmiGOcalcium ion binding  plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  membrane  integral component of membrane  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  
Ontology : EGO-EBIcalcium ion binding  plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  membrane  integral component of membrane  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  
NDEx NetworkPCDHGB4
Atlas of Cancer Signalling NetworkPCDHGB4
Wikipedia pathwaysPCDHGB4
Orthology - Evolution
OrthoDB8641
GeneTree (enSembl)ENSG00000253953
Phylogenetic Trees/Animal Genes : TreeFamPCDHGB4
HOVERGENQ9UN71
HOGENOMQ9UN71
Homologs : HomoloGenePCDHGB4
Homology/Alignments : Family Browser (UCSC)PCDHGB4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHGB4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHGB4
dbVarPCDHGB4
ClinVarPCDHGB4
1000_GenomesPCDHGB4 
Exome Variant ServerPCDHGB4
ExAC (Exome Aggregation Consortium)PCDHGB4 (select the gene name)
Genetic variants : HAPMAP8641
Genomic Variants (DGV)PCDHGB4 [DGVbeta]
DECIPHER (Syndromes)5:140767452-140892546  ENSG00000253953
CONAN: Copy Number AnalysisPCDHGB4 
Mutations
ICGC Data PortalPCDHGB4 
TCGA Data PortalPCDHGB4 
Broad Tumor PortalPCDHGB4
OASIS PortalPCDHGB4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHGB4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHGB4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHGB4
DgiDB (Drug Gene Interaction Database)PCDHGB4
DoCM (Curated mutations)PCDHGB4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHGB4 (select a term)
intoGenPCDHGB4
Cancer3DPCDHGB4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603058   
Orphanet
MedgenPCDHGB4
Genetic Testing Registry PCDHGB4
NextProtQ9UN71 [Medical]
TSGene8641
GENETestsPCDHGB4
Huge Navigator PCDHGB4 [HugePedia]
snp3D : Map Gene to Disease8641
BioCentury BCIQPCDHGB4
ClinGenPCDHGB4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8641
Chemical/Pharm GKB GenePA33059
Clinical trialPCDHGB4
Miscellaneous
canSAR (ICR)PCDHGB4 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHGB4
EVEXPCDHGB4
GoPubMedPCDHGB4
iHOPPCDHGB4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:38:05 CET 2017

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