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PCDHGB5 (protocadherin gamma subfamily B, 5)

Identity

Alias_symbol (synonym)PCDH-GAMMA-B5
Other alias
HGNC (Hugo) PCDHGB5
LocusID (NCBI) 56101
Atlas_Id 71751
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140777695 and ends at 140892546 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHGB5   8712
Cards
Entrez_Gene (NCBI)PCDHGB5  56101  protocadherin gamma subfamily B, 5
AliasesPCDH-GAMMA-B5
GeneCards (Weizmann)PCDHGB5
Ensembl hg19 (Hinxton)ENSG00000276547 [Gene_View]  chr5:140777695-140892546 [Contig_View]  PCDHGB5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000276547 [Gene_View]  chr5:140777695-140892546 [Contig_View]  PCDHGB5 [Vega]
ICGC DataPortalENSG00000276547
TCGA cBioPortalPCDHGB5
AceView (NCBI)PCDHGB5
Genatlas (Paris)PCDHGB5
WikiGenes56101
SOURCE (Princeton)PCDHGB5
Genetics Home Reference (NIH)PCDHGB5
Genomic and cartography
GoldenPath hg19 (UCSC)PCDHGB5  -     chr5:140777695-140892546 +  5q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PCDHGB5  -     5q31.3   [Description]    (hg38-Dec_2013)
EnsemblPCDHGB5 - 5q31.3 [CytoView hg19]  PCDHGB5 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHGB5 [Mapview hg19]  PCDHGB5 [Mapview hg38]
OMIM606302   
Gene and transcription
Genbank (Entrez)AF152334 AF152521 BC093877 BC093879
RefSeq transcript (Entrez)NM_018925 NM_032099
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_000012 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)PCDHGB5
Cluster EST : UnigeneHs.368160 [ NCBI ]
CGAP (NCI)Hs.368160
Alternative Splicing GalleryENSG00000276547
Gene ExpressionPCDHGB5 [ NCBI-GEO ]   PCDHGB5 [ EBI - ARRAY_EXPRESS ]   PCDHGB5 [ SEEK ]   PCDHGB5 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHGB5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56101
GTEX Portal (Tissue expression)PCDHGB5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5G0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5G0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5G0
Splice isoforms : SwissVarQ9Y5G0
PhosPhoSitePlusQ9Y5G0
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)   
Domain families : Pfam (NCBI)pfam00028    pfam08266   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHGB5
DMDM Disease mutations56101
Blocks (Seattle)PCDHGB5
SuperfamilyQ9Y5G0
Human Protein AtlasENSG00000276547
Peptide AtlasQ9Y5G0
HPRD09392
IPIIPI00003896   IPI00028624   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5G0
IntAct (EBI)Q9Y5G0
FunCoupENSG00000276547
BioGRIDPCDHGB5
STRING (EMBL)PCDHGB5
ZODIACPCDHGB5
Ontologies - Pathways
QuickGOQ9Y5G0
Ontology : AmiGOmolecular_function  calcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  biological_process  integral component of membrane  extracellular exosome  
Ontology : EGO-EBImolecular_function  calcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  biological_process  integral component of membrane  extracellular exosome  
NDEx NetworkPCDHGB5
Atlas of Cancer Signalling NetworkPCDHGB5
Wikipedia pathwaysPCDHGB5
Orthology - Evolution
OrthoDB56101
GeneTree (enSembl)ENSG00000276547
Phylogenetic Trees/Animal Genes : TreeFamPCDHGB5
HOVERGENQ9Y5G0
HOGENOMQ9Y5G0
Homologs : HomoloGenePCDHGB5
Homology/Alignments : Family Browser (UCSC)PCDHGB5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHGB5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHGB5
dbVarPCDHGB5
ClinVarPCDHGB5
1000_GenomesPCDHGB5 
Exome Variant ServerPCDHGB5
ExAC (Exome Aggregation Consortium)PCDHGB5 (select the gene name)
Genetic variants : HAPMAP56101
Genomic Variants (DGV)PCDHGB5 [DGVbeta]
DECIPHER (Syndromes)5:140777695-140892546  ENSG00000276547
CONAN: Copy Number AnalysisPCDHGB5 
Mutations
ICGC Data PortalPCDHGB5 
TCGA Data PortalPCDHGB5 
Broad Tumor PortalPCDHGB5
OASIS PortalPCDHGB5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPCDHGB5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHGB5
DgiDB (Drug Gene Interaction Database)PCDHGB5
DoCM (Curated mutations)PCDHGB5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHGB5 (select a term)
intoGenPCDHGB5
Cancer3DPCDHGB5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606302   
Orphanet
MedgenPCDHGB5
Genetic Testing Registry PCDHGB5
NextProtQ9Y5G0 [Medical]
TSGene56101
GENETestsPCDHGB5
Huge Navigator PCDHGB5 [HugePedia]
snp3D : Map Gene to Disease56101
BioCentury BCIQPCDHGB5
ClinGenPCDHGB5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56101
Chemical/Pharm GKB GenePA33060
Clinical trialPCDHGB5
Miscellaneous
canSAR (ICR)PCDHGB5 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHGB5
EVEXPCDHGB5
GoPubMedPCDHGB5
iHOPPCDHGB5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:38:05 CET 2017

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