PCDHGB6 (protocadherin gamma subfamily B, 6)

2014-02-01  

Identity

HGNC
PCDHGB6
LOCATION
5q31.3
LOCUSID
56100
ALIAS
PCDH-GAMMA-B6

Other Information

Locus ID:

NCBI: 56100
MIM: 606303
HGNC: 8713
Ensembl: ENSG00000253305

Variants:

dbSNP: 56100
ClinVar: 56100
TCGA: ENSG00000253305
COSMIC: PCDHGB6

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000253305ENST00000520790Q9Y5F9
ENSG00000253305ENST00000616430Q9Y5F9

Expression (GTEx)

0
1
2
3
4
5
6
7
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
N/A

References

Pubmed IDYearTitleCitations
240819452013A prognostic DNA methylation signature for stage I non-small-cell lung cancer.100
274856112016Analysis of RTEL1 and PCDHGB6 promoter methylation in circulating-free DNA of lung cancer patients using liquid biopsy: A pilot study.0

Citation

Dessen P

PCDHGB6 (protocadherin gamma subfamily B, 6)

Atlas Genet Cytogenet Oncol Haematol. 2014-02-01

Online version: http://atlasgeneticsoncology.org/gene/53701/pcdhgb6