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PCDHGB6 (protocadherin gamma subfamily B, 6)

Identity

Alias_symbol (synonym)PCDH-GAMMA-B6
Other alias
HGNC (Hugo) PCDHGB6
LocusID (NCBI) 56100
Atlas_Id 53701
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141408203 and ends at 141512979 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHGB6   8713
Cards
Entrez_Gene (NCBI)PCDHGB6  56100  protocadherin gamma subfamily B, 6
AliasesPCDH-GAMMA-B6
GeneCards (Weizmann)PCDHGB6
Ensembl hg19 (Hinxton)ENSG00000253305 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253305 [Gene_View]  chr5:141408203-141512979 [Contig_View]  PCDHGB6 [Vega]
ICGC DataPortalENSG00000253305
TCGA cBioPortalPCDHGB6
AceView (NCBI)PCDHGB6
Genatlas (Paris)PCDHGB6
WikiGenes56100
SOURCE (Princeton)PCDHGB6
Genetics Home Reference (NIH)PCDHGB6
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHGB6  -     chr5:141408203-141512979 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHGB6  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHGB6 - 5q31.3 [CytoView hg19]  PCDHGB6 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHGB6 [Mapview hg19]  PCDHGB6 [Mapview hg38]
OMIM606303   
Gene and transcription
Genbank (Entrez)AF152335 AF152522 BC156637
RefSeq transcript (Entrez)NM_018926 NM_032100
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHGB6
Cluster EST : UnigeneHs.368160 [ NCBI ]
CGAP (NCI)Hs.368160
Alternative Splicing GalleryENSG00000253305
Gene ExpressionPCDHGB6 [ NCBI-GEO ]   PCDHGB6 [ EBI - ARRAY_EXPRESS ]   PCDHGB6 [ SEEK ]   PCDHGB6 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHGB6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56100
GTEX Portal (Tissue expression)PCDHGB6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5F9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5F9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5F9
Splice isoforms : SwissVarQ9Y5F9
PhosPhoSitePlusQ9Y5F9
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_C    Cadherin_CBD    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_C_2 (PF16492)    Cadherin_tail (PF15974)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam16492    pfam15974   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHGB6
DMDM Disease mutations56100
Blocks (Seattle)PCDHGB6
SuperfamilyQ9Y5F9
Human Protein AtlasENSG00000253305
Peptide AtlasQ9Y5F9
HPRD09393
IPIIPI00003897   IPI00028625   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5F9
IntAct (EBI)Q9Y5F9
FunCoupENSG00000253305
BioGRIDPCDHGB6
STRING (EMBL)PCDHGB6
ZODIACPCDHGB6
Ontologies - Pathways
QuickGOQ9Y5F9
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
NDEx NetworkPCDHGB6
Atlas of Cancer Signalling NetworkPCDHGB6
Wikipedia pathwaysPCDHGB6
Orthology - Evolution
OrthoDB56100
GeneTree (enSembl)ENSG00000253305
Phylogenetic Trees/Animal Genes : TreeFamPCDHGB6
HOVERGENQ9Y5F9
HOGENOMQ9Y5F9
Homologs : HomoloGenePCDHGB6
Homology/Alignments : Family Browser (UCSC)PCDHGB6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHGB6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHGB6
dbVarPCDHGB6
ClinVarPCDHGB6
1000_GenomesPCDHGB6 
Exome Variant ServerPCDHGB6
ExAC (Exome Aggregation Consortium)PCDHGB6 (select the gene name)
Genetic variants : HAPMAP56100
Genomic Variants (DGV)PCDHGB6 [DGVbeta]
DECIPHERPCDHGB6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDHGB6 
Mutations
ICGC Data PortalPCDHGB6 
TCGA Data PortalPCDHGB6 
Broad Tumor PortalPCDHGB6
OASIS PortalPCDHGB6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHGB6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHGB6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHGB6
DgiDB (Drug Gene Interaction Database)PCDHGB6
DoCM (Curated mutations)PCDHGB6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHGB6 (select a term)
intoGenPCDHGB6
Cancer3DPCDHGB6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606303   
Orphanet
MedgenPCDHGB6
Genetic Testing Registry PCDHGB6
NextProtQ9Y5F9 [Medical]
TSGene56100
GENETestsPCDHGB6
Target ValidationPCDHGB6
Huge Navigator PCDHGB6 [HugePedia]
snp3D : Map Gene to Disease56100
BioCentury BCIQPCDHGB6
ClinGenPCDHGB6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56100
Chemical/Pharm GKB GenePA33061
Clinical trialPCDHGB6
Miscellaneous
canSAR (ICR)PCDHGB6 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHGB6
EVEXPCDHGB6
GoPubMedPCDHGB6
iHOPPCDHGB6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:10:13 CEST 2017

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