Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PCDHGB7 (protocadherin gamma subfamily B, 7)

Identity

Alias_symbol (synonym)ME6
PCDH-GAMMA-B7
Other alias
HGNC (Hugo) PCDHGB7
LocusID (NCBI) 56099
Atlas_Id 71752
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140797260 and ends at 140892548 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHGB7   8714
Cards
Entrez_Gene (NCBI)PCDHGB7  56099  protocadherin gamma subfamily B, 7
AliasesME6; PCDH-GAMMA-B7
GeneCards (Weizmann)PCDHGB7
Ensembl hg19 (Hinxton)ENSG00000254122 [Gene_View]  chr5:140797260-140892548 [Contig_View]  PCDHGB7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000254122 [Gene_View]  chr5:140797260-140892548 [Contig_View]  PCDHGB7 [Vega]
ICGC DataPortalENSG00000254122
TCGA cBioPortalPCDHGB7
AceView (NCBI)PCDHGB7
Genatlas (Paris)PCDHGB7
WikiGenes56099
SOURCE (Princeton)PCDHGB7
Genetics Home Reference (NIH)PCDHGB7
Genomic and cartography
GoldenPath hg19 (UCSC)PCDHGB7  -     chr5:140797260-140892548 +  5q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PCDHGB7  -     5q31.3   [Description]    (hg38-Dec_2013)
EnsemblPCDHGB7 - 5q31.3 [CytoView hg19]  PCDHGB7 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHGB7 [Mapview hg19]  PCDHGB7 [Mapview hg38]
OMIM606304   
Gene and transcription
Genbank (Entrez)AA418589 AF152336 AF152523 AW057773 BC051788
RefSeq transcript (Entrez)NM_018927 NM_032101
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_000012 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)PCDHGB7
Cluster EST : UnigeneHs.368160 [ NCBI ]
CGAP (NCI)Hs.368160
Alternative Splicing GalleryENSG00000254122
Gene ExpressionPCDHGB7 [ NCBI-GEO ]   PCDHGB7 [ EBI - ARRAY_EXPRESS ]   PCDHGB7 [ SEEK ]   PCDHGB7 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHGB7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56099
GTEX Portal (Tissue expression)PCDHGB7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5F8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5F8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5F8
Splice isoforms : SwissVarQ9Y5F8
PhosPhoSitePlusQ9Y5F8
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)   
Domain families : Pfam (NCBI)pfam00028    pfam08266   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHGB7
DMDM Disease mutations56099
Blocks (Seattle)PCDHGB7
SuperfamilyQ9Y5F8
Human Protein AtlasENSG00000254122
Peptide AtlasQ9Y5F8
HPRD06952
IPIIPI00003904   IPI00100413   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5F8
IntAct (EBI)Q9Y5F8
FunCoupENSG00000254122
BioGRIDPCDHGB7
STRING (EMBL)PCDHGB7
ZODIACPCDHGB7
Ontologies - Pathways
QuickGOQ9Y5F8
Ontology : AmiGOcalcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  
Ontology : EGO-EBIcalcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  
NDEx NetworkPCDHGB7
Atlas of Cancer Signalling NetworkPCDHGB7
Wikipedia pathwaysPCDHGB7
Orthology - Evolution
OrthoDB56099
GeneTree (enSembl)ENSG00000254122
Phylogenetic Trees/Animal Genes : TreeFamPCDHGB7
HOVERGENQ9Y5F8
HOGENOMQ9Y5F8
Homologs : HomoloGenePCDHGB7
Homology/Alignments : Family Browser (UCSC)PCDHGB7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHGB7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHGB7
dbVarPCDHGB7
ClinVarPCDHGB7
1000_GenomesPCDHGB7 
Exome Variant ServerPCDHGB7
ExAC (Exome Aggregation Consortium)PCDHGB7 (select the gene name)
Genetic variants : HAPMAP56099
Genomic Variants (DGV)PCDHGB7 [DGVbeta]
DECIPHER (Syndromes)5:140797260-140892548  ENSG00000254122
CONAN: Copy Number AnalysisPCDHGB7 
Mutations
ICGC Data PortalPCDHGB7 
TCGA Data PortalPCDHGB7 
Broad Tumor PortalPCDHGB7
OASIS PortalPCDHGB7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHGB7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHGB7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHGB7
DgiDB (Drug Gene Interaction Database)PCDHGB7
DoCM (Curated mutations)PCDHGB7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHGB7 (select a term)
intoGenPCDHGB7
Cancer3DPCDHGB7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606304   
Orphanet
MedgenPCDHGB7
Genetic Testing Registry PCDHGB7
NextProtQ9Y5F8 [Medical]
TSGene56099
GENETestsPCDHGB7
Huge Navigator PCDHGB7 [HugePedia]
snp3D : Map Gene to Disease56099
BioCentury BCIQPCDHGB7
ClinGenPCDHGB7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56099
Chemical/Pharm GKB GenePA33062
Clinical trialPCDHGB7
Miscellaneous
canSAR (ICR)PCDHGB7 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHGB7
EVEXPCDHGB7
GoPubMedPCDHGB7
iHOPPCDHGB7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:38:05 CET 2017

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