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PCDHGC3 (protocadherin gamma subfamily C, 3)

Identity

Alias_namesPCDH2
Alias_symbol (synonym)PC-43
PC43
PCDH-GAMMA-C3
Other alias
HGNC (Hugo) PCDHGC3
LocusID (NCBI) 5098
Atlas_Id 41666
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141476002 and ends at 141512977 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PCDHGC3 (5q31.3) / QKI (6q26)PCDHGC3 5q31.3 / QKI 6q26

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHGC3   8716
Cards
Entrez_Gene (NCBI)PCDHGC3  5098  protocadherin gamma subfamily C, 3
AliasesPC43; PCDH-GAMMA-C3; PCDH2
GeneCards (Weizmann)PCDHGC3
Ensembl hg19 (Hinxton)ENSG00000240184 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000240184 [Gene_View]  chr5:141476002-141512977 [Contig_View]  PCDHGC3 [Vega]
ICGC DataPortalENSG00000240184
TCGA cBioPortalPCDHGC3
AceView (NCBI)PCDHGC3
Genatlas (Paris)PCDHGC3
WikiGenes5098
SOURCE (Princeton)PCDHGC3
Genetics Home Reference (NIH)PCDHGC3
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHGC3  -     chr5:141476002-141512977 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHGC3  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHGC3 - 5q31.3 [CytoView hg19]  PCDHGC3 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHGC3 [Mapview hg19]  PCDHGC3 [Mapview hg38]
OMIM603627   
Gene and transcription
Genbank (Entrez)AF152337 AF152524 BC004321 BC006439 BC019299
RefSeq transcript (Entrez)NM_002588 NM_032402 NM_032403
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHGC3
Cluster EST : UnigeneHs.368160 [ NCBI ]
CGAP (NCI)Hs.368160
Alternative Splicing GalleryENSG00000240184
Gene ExpressionPCDHGC3 [ NCBI-GEO ]   PCDHGC3 [ EBI - ARRAY_EXPRESS ]   PCDHGC3 [ SEEK ]   PCDHGC3 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHGC3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5098
GTEX Portal (Tissue expression)PCDHGC3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UN70   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UN70  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UN70
Splice isoforms : SwissVarQ9UN70
PhosPhoSitePlusQ9UN70
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_C    Cadherin_CBD    Cadherin_CS    Cadherin_N    PCDHGC3   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_C_2 (PF16492)    Cadherin_tail (PF15974)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam16492    pfam15974   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHGC3
DMDM Disease mutations5098
Blocks (Seattle)PCDHGC3
SuperfamilyQ9UN70
Human Protein AtlasENSG00000240184
Peptide AtlasQ9UN70
HPRD04693
IPIIPI00031751   
Protein Interaction databases
DIP (DOE-UCLA)Q9UN70
IntAct (EBI)Q9UN70
FunCoupENSG00000240184
BioGRIDPCDHGC3
STRING (EMBL)PCDHGC3
ZODIACPCDHGC3
Ontologies - Pathways
QuickGOQ9UN70
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  membrane  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  synapse organization  extracellular exosome  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  membrane  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  synapse organization  extracellular exosome  
NDEx NetworkPCDHGC3
Atlas of Cancer Signalling NetworkPCDHGC3
Wikipedia pathwaysPCDHGC3
Orthology - Evolution
OrthoDB5098
GeneTree (enSembl)ENSG00000240184
Phylogenetic Trees/Animal Genes : TreeFamPCDHGC3
HOVERGENQ9UN70
HOGENOMQ9UN70
Homologs : HomoloGenePCDHGC3
Homology/Alignments : Family Browser (UCSC)PCDHGC3
Gene fusions - Rearrangements
Fusion : MitelmanPCDHGC3/QKI [5q31.3/6q26]  
Fusion: TCGAPCDHGC3 5q31.3 QKI 6q26 GBM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHGC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHGC3
dbVarPCDHGC3
ClinVarPCDHGC3
1000_GenomesPCDHGC3 
Exome Variant ServerPCDHGC3
ExAC (Exome Aggregation Consortium)PCDHGC3 (select the gene name)
Genetic variants : HAPMAP5098
Genomic Variants (DGV)PCDHGC3 [DGVbeta]
DECIPHERPCDHGC3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDHGC3 
Mutations
ICGC Data PortalPCDHGC3 
TCGA Data PortalPCDHGC3 
Broad Tumor PortalPCDHGC3
OASIS PortalPCDHGC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHGC3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHGC3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHGC3
DgiDB (Drug Gene Interaction Database)PCDHGC3
DoCM (Curated mutations)PCDHGC3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHGC3 (select a term)
intoGenPCDHGC3
Cancer3DPCDHGC3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603627   
Orphanet
MedgenPCDHGC3
Genetic Testing Registry PCDHGC3
NextProtQ9UN70 [Medical]
TSGene5098
GENETestsPCDHGC3
Target ValidationPCDHGC3
Huge Navigator PCDHGC3 [HugePedia]
snp3D : Map Gene to Disease5098
BioCentury BCIQPCDHGC3
ClinGenPCDHGC3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5098
Chemical/Pharm GKB GenePA33064
Clinical trialPCDHGC3
Miscellaneous
canSAR (ICR)PCDHGC3 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHGC3
EVEXPCDHGC3
GoPubMedPCDHGC3
iHOPPCDHGC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:02:50 CEST 2017

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