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PCDHGC4 (protocadherin gamma subfamily C, 4)

Identity

Alias_symbol (synonym)PCDH-GAMMA-C4
Other alias
HGNC (Hugo) PCDHGC4
LocusID (NCBI) 56098
Atlas_Id 71754
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141485174 and ends at 141512979 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHGC4   8717
Cards
Entrez_Gene (NCBI)PCDHGC4  56098  protocadherin gamma subfamily C, 4
AliasesPCDH-GAMMA-C4
GeneCards (Weizmann)PCDHGC4
Ensembl hg19 (Hinxton)ENSG00000242419 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000242419 [Gene_View]  chr5:141485174-141512979 [Contig_View]  PCDHGC4 [Vega]
ICGC DataPortalENSG00000242419
TCGA cBioPortalPCDHGC4
AceView (NCBI)PCDHGC4
Genatlas (Paris)PCDHGC4
WikiGenes56098
SOURCE (Princeton)PCDHGC4
Genetics Home Reference (NIH)PCDHGC4
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHGC4  -     chr5:141485174-141512979 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHGC4  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHGC4 - 5q31.3 [CytoView hg19]  PCDHGC4 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHGC4 [Mapview hg19]  PCDHGC4 [Mapview hg38]
OMIM606305   
Gene and transcription
Genbank (Entrez)AF152338 AF152525 BC042650 BC101035 BC101036
RefSeq transcript (Entrez)NM_018928 NM_032406
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHGC4
Cluster EST : UnigeneHs.368160 [ NCBI ]
CGAP (NCI)Hs.368160
Alternative Splicing GalleryENSG00000242419
Gene ExpressionPCDHGC4 [ NCBI-GEO ]   PCDHGC4 [ EBI - ARRAY_EXPRESS ]   PCDHGC4 [ SEEK ]   PCDHGC4 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHGC4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56098
GTEX Portal (Tissue expression)PCDHGC4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5F7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5F7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5F7
Splice isoforms : SwissVarQ9Y5F7
PhosPhoSitePlusQ9Y5F7
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CBD    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_tail (PF15974)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam15974   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHGC4
DMDM Disease mutations56098
Blocks (Seattle)PCDHGC4
SuperfamilyQ9Y5F7
Human Protein AtlasENSG00000242419
Peptide AtlasQ9Y5F7
HPRD07317
IPIIPI00163985   IPI00031765   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5F7
IntAct (EBI)Q9Y5F7
FunCoupENSG00000242419
BioGRIDPCDHGC4
STRING (EMBL)PCDHGC4
ZODIACPCDHGC4
Ontologies - Pathways
QuickGOQ9Y5F7
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
NDEx NetworkPCDHGC4
Atlas of Cancer Signalling NetworkPCDHGC4
Wikipedia pathwaysPCDHGC4
Orthology - Evolution
OrthoDB56098
GeneTree (enSembl)ENSG00000242419
Phylogenetic Trees/Animal Genes : TreeFamPCDHGC4
HOVERGENQ9Y5F7
HOGENOMQ9Y5F7
Homologs : HomoloGenePCDHGC4
Homology/Alignments : Family Browser (UCSC)PCDHGC4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHGC4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHGC4
dbVarPCDHGC4
ClinVarPCDHGC4
1000_GenomesPCDHGC4 
Exome Variant ServerPCDHGC4
ExAC (Exome Aggregation Consortium)PCDHGC4 (select the gene name)
Genetic variants : HAPMAP56098
Genomic Variants (DGV)PCDHGC4 [DGVbeta]
DECIPHERPCDHGC4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDHGC4 
Mutations
ICGC Data PortalPCDHGC4 
TCGA Data PortalPCDHGC4 
Broad Tumor PortalPCDHGC4
OASIS PortalPCDHGC4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHGC4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHGC4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHGC4
DgiDB (Drug Gene Interaction Database)PCDHGC4
DoCM (Curated mutations)PCDHGC4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHGC4 (select a term)
intoGenPCDHGC4
Cancer3DPCDHGC4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606305   
Orphanet
MedgenPCDHGC4
Genetic Testing Registry PCDHGC4
NextProtQ9Y5F7 [Medical]
TSGene56098
GENETestsPCDHGC4
Target ValidationPCDHGC4
Huge Navigator PCDHGC4 [HugePedia]
snp3D : Map Gene to Disease56098
BioCentury BCIQPCDHGC4
ClinGenPCDHGC4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56098
Chemical/Pharm GKB GenePA33065
Clinical trialPCDHGC4
Miscellaneous
canSAR (ICR)PCDHGC4 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHGC4
EVEXPCDHGC4
GoPubMedPCDHGC4
iHOPPCDHGC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:49 CEST 2017

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