Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PCDHGC5 (protocadherin gamma subfamily C, 5)

Identity

Alias_symbol (synonym)PCDH-GAMMA-C5
Other alias
HGNC (Hugo) PCDHGC5
LocusID (NCBI) 56097
Atlas_Id 71755
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141489241 and ends at 141512979 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHGC5   8718
Cards
Entrez_Gene (NCBI)PCDHGC5  56097  protocadherin gamma subfamily C, 5
AliasesPCDH-GAMMA-C5
GeneCards (Weizmann)PCDHGC5
Ensembl hg19 (Hinxton)ENSG00000240764 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000240764 [Gene_View]  chr5:141489241-141512979 [Contig_View]  PCDHGC5 [Vega]
ICGC DataPortalENSG00000240764
TCGA cBioPortalPCDHGC5
AceView (NCBI)PCDHGC5
Genatlas (Paris)PCDHGC5
WikiGenes56097
SOURCE (Princeton)PCDHGC5
Genetics Home Reference (NIH)PCDHGC5
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHGC5  -     chr5:141489241-141512979 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHGC5  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHGC5 - 5q31.3 [CytoView hg19]  PCDHGC5 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHGC5 [Mapview hg19]  PCDHGC5 [Mapview hg38]
OMIM606306   
Gene and transcription
Genbank (Entrez)AF152339 AF152526 BC112081 BC112083
RefSeq transcript (Entrez)NM_018929 NM_032407
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHGC5
Cluster EST : UnigeneHs.368160 [ NCBI ]
CGAP (NCI)Hs.368160
Alternative Splicing GalleryENSG00000240764
Gene ExpressionPCDHGC5 [ NCBI-GEO ]   PCDHGC5 [ EBI - ARRAY_EXPRESS ]   PCDHGC5 [ SEEK ]   PCDHGC5 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHGC5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56097
GTEX Portal (Tissue expression)PCDHGC5
Human Protein AtlasENSG00000240764-PCDHGC5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5F6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5F6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5F6
Splice isoforms : SwissVarQ9Y5F6
PhosPhoSitePlusQ9Y5F6
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_C    Cadherin_CBD    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_C_2 (PF16492)    Cadherin_tail (PF15974)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam16492    pfam15974   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHGC5
DMDM Disease mutations56097
Blocks (Seattle)PCDHGC5
SuperfamilyQ9Y5F6
Human Protein Atlas [tissue]ENSG00000240764-PCDHGC5 [tissue]
Peptide AtlasQ9Y5F6
HPRD07318
IPIIPI00003907   IPI00031766   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5F6
IntAct (EBI)Q9Y5F6
FunCoupENSG00000240764
BioGRIDPCDHGC5
STRING (EMBL)PCDHGC5
ZODIACPCDHGC5
Ontologies - Pathways
QuickGOQ9Y5F6
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  synapse organization  extracellular exosome  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  synapse organization  extracellular exosome  
NDEx NetworkPCDHGC5
Atlas of Cancer Signalling NetworkPCDHGC5
Wikipedia pathwaysPCDHGC5
Orthology - Evolution
OrthoDB56097
GeneTree (enSembl)ENSG00000240764
Phylogenetic Trees/Animal Genes : TreeFamPCDHGC5
HOVERGENQ9Y5F6
HOGENOMQ9Y5F6
Homologs : HomoloGenePCDHGC5
Homology/Alignments : Family Browser (UCSC)PCDHGC5
Gene fusions - Rearrangements
Tumor Fusion PortalPCDHGC5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHGC5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHGC5
dbVarPCDHGC5
ClinVarPCDHGC5
1000_GenomesPCDHGC5 
Exome Variant ServerPCDHGC5
ExAC (Exome Aggregation Consortium)ENSG00000240764
GNOMAD BrowserENSG00000240764
Genetic variants : HAPMAP56097
Genomic Variants (DGV)PCDHGC5 [DGVbeta]
DECIPHERPCDHGC5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDHGC5 
Mutations
ICGC Data PortalPCDHGC5 
TCGA Data PortalPCDHGC5 
Broad Tumor PortalPCDHGC5
OASIS PortalPCDHGC5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHGC5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHGC5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHGC5
DgiDB (Drug Gene Interaction Database)PCDHGC5
DoCM (Curated mutations)PCDHGC5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHGC5 (select a term)
intoGenPCDHGC5
Cancer3DPCDHGC5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606306   
Orphanet
DisGeNETPCDHGC5
MedgenPCDHGC5
Genetic Testing Registry PCDHGC5
NextProtQ9Y5F6 [Medical]
TSGene56097
GENETestsPCDHGC5
Target ValidationPCDHGC5
Huge Navigator PCDHGC5 [HugePedia]
snp3D : Map Gene to Disease56097
BioCentury BCIQPCDHGC5
ClinGenPCDHGC5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56097
Chemical/Pharm GKB GenePA33066
Clinical trialPCDHGC5
Miscellaneous
canSAR (ICR)PCDHGC5 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHGC5
EVEXPCDHGC5
GoPubMedPCDHGC5
iHOPPCDHGC5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 20:06:35 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.