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PCED1A (PC-esterase domain containing 1A)

Identity

Alias_namesC20orf81
FAM113A
chromosome 20 open reading frame 81
family with sequence similarity 113, member A
Alias_symbol (synonym)bA12M19.1
FLJ22376
Other alias
HGNC (Hugo) PCED1A
LocusID (NCBI) 64773
Atlas_Id 71756
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 2835315 and ends at 2841243 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCED1A   16212
Cards
Entrez_Gene (NCBI)PCED1A  64773  PC-esterase domain containing 1A
AliasesC20orf81; FAM113A; bA12M19.1
GeneCards (Weizmann)PCED1A
Ensembl hg19 (Hinxton)ENSG00000132635 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132635 [Gene_View]  chr20:2835315-2841243 [Contig_View]  PCED1A [Vega]
ICGC DataPortalENSG00000132635
TCGA cBioPortalPCED1A
AceView (NCBI)PCED1A
Genatlas (Paris)PCED1A
WikiGenes64773
SOURCE (Princeton)PCED1A
Genetics Home Reference (NIH)PCED1A
Genomic and cartography
GoldenPath hg38 (UCSC)PCED1A  -     chr20:2835315-2841243 -  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCED1A  -     20p13   [Description]    (hg19-Feb_2009)
EnsemblPCED1A - 20p13 [CytoView hg19]  PCED1A - 20p13 [CytoView hg38]
Mapping of homologs : NCBIPCED1A [Mapview hg19]  PCED1A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA769290 AK026029 AK056353 AK124917 AK126535
RefSeq transcript (Entrez)NM_001271168 NM_022760
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCED1A
Cluster EST : UnigeneHs.743644 [ NCBI ]
CGAP (NCI)Hs.743644
Alternative Splicing GalleryENSG00000132635
Gene ExpressionPCED1A [ NCBI-GEO ]   PCED1A [ EBI - ARRAY_EXPRESS ]   PCED1A [ SEEK ]   PCED1A [ MEM ]
Gene Expression Viewer (FireBrowse)PCED1A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64773
GTEX Portal (Tissue expression)PCED1A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1Q7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H1Q7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H1Q7
Splice isoforms : SwissVarQ9H1Q7
PhosPhoSitePlusQ9H1Q7
Domains : Interpro (EBI)PC-Esterase    SGNH_hydro   
Domain families : Pfam (Sanger)PC-Esterase (PF13839)   
Domain families : Pfam (NCBI)pfam13839   
Conserved Domain (NCBI)PCED1A
DMDM Disease mutations64773
Blocks (Seattle)PCED1A
SuperfamilyQ9H1Q7
Human Protein AtlasENSG00000132635
Peptide AtlasQ9H1Q7
HPRD12786
IPIIPI00024959   IPI00218765   IPI00218766   IPI00743566   IPI00871502   IPI00645165   
Protein Interaction databases
DIP (DOE-UCLA)Q9H1Q7
IntAct (EBI)Q9H1Q7
FunCoupENSG00000132635
BioGRIDPCED1A
STRING (EMBL)PCED1A
ZODIACPCED1A
Ontologies - Pathways
QuickGOQ9H1Q7
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkPCED1A
Atlas of Cancer Signalling NetworkPCED1A
Wikipedia pathwaysPCED1A
Orthology - Evolution
OrthoDB64773
GeneTree (enSembl)ENSG00000132635
Phylogenetic Trees/Animal Genes : TreeFamPCED1A
HOVERGENQ9H1Q7
HOGENOMQ9H1Q7
Homologs : HomoloGenePCED1A
Homology/Alignments : Family Browser (UCSC)PCED1A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCED1A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCED1A
dbVarPCED1A
ClinVarPCED1A
1000_GenomesPCED1A 
Exome Variant ServerPCED1A
ExAC (Exome Aggregation Consortium)PCED1A (select the gene name)
Genetic variants : HAPMAP64773
Genomic Variants (DGV)PCED1A [DGVbeta]
DECIPHERPCED1A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCED1A 
Mutations
ICGC Data PortalPCED1A 
TCGA Data PortalPCED1A 
Broad Tumor PortalPCED1A
OASIS PortalPCED1A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPCED1A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCED1A
DgiDB (Drug Gene Interaction Database)PCED1A
DoCM (Curated mutations)PCED1A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCED1A (select a term)
intoGenPCED1A
Cancer3DPCED1A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPCED1A
Genetic Testing Registry PCED1A
NextProtQ9H1Q7 [Medical]
TSGene64773
GENETestsPCED1A
Target ValidationPCED1A
Huge Navigator PCED1A [HugePedia]
snp3D : Map Gene to Disease64773
BioCentury BCIQPCED1A
ClinGenPCED1A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64773
Chemical/Pharm GKB GenePA25790
Clinical trialPCED1A
Miscellaneous
canSAR (ICR)PCED1A (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCED1A
EVEXPCED1A
GoPubMedPCED1A
iHOPPCED1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:35:34 CEST 2017

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