Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PCED1B-AS1 (PCED1B antisense RNA 1)

Identity

Alias_namesPCED1B antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) PCED1B-AS1
LocusID (NCBI) 100233209
Atlas_Id 71758
Location 12q13.11  [Link to chromosome band 12q13]
Location_base_pair Starts at 47208420 and ends at 47216443 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCED1B-AS1   44166
Cards
Entrez_Gene (NCBI)PCED1B-AS1  100233209  PCED1B antisense RNA 1
Aliases
GeneCards (Weizmann)PCED1B-AS1
Ensembl hg19 (Hinxton)ENSG00000247774 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000247774 [Gene_View]  chr12:47208420-47216443 [Contig_View]  PCED1B-AS1 [Vega]
ICGC DataPortalENSG00000247774
TCGA cBioPortalPCED1B-AS1
AceView (NCBI)PCED1B-AS1
Genatlas (Paris)PCED1B-AS1
WikiGenes100233209
SOURCE (Princeton)PCED1B-AS1
Genetics Home Reference (NIH)PCED1B-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)PCED1B-AS1  -     chr12:47208420-47216443 -  12q13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCED1B-AS1  -     12q13.11   [Description]    (hg19-Feb_2009)
EnsemblPCED1B-AS1 - 12q13.11 [CytoView hg19]  PCED1B-AS1 - 12q13.11 [CytoView hg38]
Mapping of homologs : NCBIPCED1B-AS1 [Mapview hg19]  PCED1B-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA213858 AK123977 DA925061
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCED1B-AS1
Cluster EST : UnigeneHs.657722 [ NCBI ]
CGAP (NCI)Hs.657722
Alternative Splicing GalleryENSG00000247774
Gene ExpressionPCED1B-AS1 [ NCBI-GEO ]   PCED1B-AS1 [ EBI - ARRAY_EXPRESS ]   PCED1B-AS1 [ SEEK ]   PCED1B-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)PCED1B-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100233209
GTEX Portal (Tissue expression)PCED1B-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PCED1B-AS1
DMDM Disease mutations100233209
Blocks (Seattle)PCED1B-AS1
Human Protein AtlasENSG00000247774
Protein Interaction databases
FunCoupENSG00000247774
BioGRIDPCED1B-AS1
STRING (EMBL)PCED1B-AS1
ZODIACPCED1B-AS1
Ontologies - Pathways
Huge Navigator PCED1B-AS1 [HugePedia]
snp3D : Map Gene to Disease100233209
BioCentury BCIQPCED1B-AS1
ClinGenPCED1B-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100233209
Clinical trialPCED1B-AS1
Miscellaneous
canSAR (ICR)PCED1B-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCED1B-AS1
EVEXPCED1B-AS1
GoPubMedPCED1B-AS1
iHOPPCED1B-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:50 CEST 2017

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