Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PCED1B (PC-esterase domain containing 1B)

Identity

Alias_namesFAM113B
family with sequence similarity 113, member B
Alias_symbol (synonym)MGC16044
Other alias
HGNC (Hugo) PCED1B
LocusID (NCBI) 91523
Atlas_Id 71757
Location 12q13.11  [Link to chromosome band 12q13]
Location_base_pair Starts at 47079603 and ends at 47236663 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCED1B   28255
Cards
Entrez_Gene (NCBI)PCED1B  91523  PC-esterase domain containing 1B
AliasesFAM113B
GeneCards (Weizmann)PCED1B
Ensembl hg19 (Hinxton)ENSG00000179715 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179715 [Gene_View]  chr12:47079603-47236663 [Contig_View]  PCED1B [Vega]
ICGC DataPortalENSG00000179715
TCGA cBioPortalPCED1B
AceView (NCBI)PCED1B
Genatlas (Paris)PCED1B
WikiGenes91523
SOURCE (Princeton)PCED1B
Genetics Home Reference (NIH)PCED1B
Genomic and cartography
GoldenPath hg38 (UCSC)PCED1B  -     chr12:47079603-47236663 +  12q13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCED1B  -     12q13.11   [Description]    (hg19-Feb_2009)
EnsemblPCED1B - 12q13.11 [CytoView hg19]  PCED1B - 12q13.11 [CytoView hg38]
Mapping of homologs : NCBIPCED1B [Mapview hg19]  PCED1B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC008360 BC016154 BC072670 BM545125 CR985281
RefSeq transcript (Entrez)NM_001281429 NM_138371
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCED1B
Cluster EST : UnigeneHs.560100 [ NCBI ]
CGAP (NCI)Hs.560100
Alternative Splicing GalleryENSG00000179715
Gene ExpressionPCED1B [ NCBI-GEO ]   PCED1B [ EBI - ARRAY_EXPRESS ]   PCED1B [ SEEK ]   PCED1B [ MEM ]
Gene Expression Viewer (FireBrowse)PCED1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91523
GTEX Portal (Tissue expression)PCED1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96HM7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96HM7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96HM7
Splice isoforms : SwissVarQ96HM7
PhosPhoSitePlusQ96HM7
Domains : Interpro (EBI)SGNH_hydro   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PCED1B
DMDM Disease mutations91523
Blocks (Seattle)PCED1B
SuperfamilyQ96HM7
Human Protein AtlasENSG00000179715
Peptide AtlasQ96HM7
HPRD17513
IPIIPI00063131   IPI00185029   IPI01011518   IPI01021841   IPI01025105   IPI01020934   IPI01020784   
Protein Interaction databases
DIP (DOE-UCLA)Q96HM7
IntAct (EBI)Q96HM7
FunCoupENSG00000179715
BioGRIDPCED1B
STRING (EMBL)PCED1B
ZODIACPCED1B
Ontologies - Pathways
QuickGOQ96HM7
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkPCED1B
Atlas of Cancer Signalling NetworkPCED1B
Wikipedia pathwaysPCED1B
Orthology - Evolution
OrthoDB91523
GeneTree (enSembl)ENSG00000179715
Phylogenetic Trees/Animal Genes : TreeFamPCED1B
HOVERGENQ96HM7
HOGENOMQ96HM7
Homologs : HomoloGenePCED1B
Homology/Alignments : Family Browser (UCSC)PCED1B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCED1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCED1B
dbVarPCED1B
ClinVarPCED1B
1000_GenomesPCED1B 
Exome Variant ServerPCED1B
ExAC (Exome Aggregation Consortium)PCED1B (select the gene name)
Genetic variants : HAPMAP91523
Genomic Variants (DGV)PCED1B [DGVbeta]
DECIPHERPCED1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCED1B 
Mutations
ICGC Data PortalPCED1B 
TCGA Data PortalPCED1B 
Broad Tumor PortalPCED1B
OASIS PortalPCED1B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPCED1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCED1B
DgiDB (Drug Gene Interaction Database)PCED1B
DoCM (Curated mutations)PCED1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCED1B (select a term)
intoGenPCED1B
Cancer3DPCED1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPCED1B
Genetic Testing Registry PCED1B
NextProtQ96HM7 [Medical]
TSGene91523
GENETestsPCED1B
Target ValidationPCED1B
Huge Navigator PCED1B [HugePedia]
snp3D : Map Gene to Disease91523
BioCentury BCIQPCED1B
ClinGenPCED1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91523
Chemical/Pharm GKB GenePA143485471
Clinical trialPCED1B
Miscellaneous
canSAR (ICR)PCED1B (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCED1B
EVEXPCED1B
GoPubMedPCED1B
iHOPPCED1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:34:10 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.