Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PCF11-AS1 (PCF11 antisense RNA 1)

Identity

Alias_symbol (synonym)ENST00000602322.1
Other alias-
HGNC (Hugo) PCF11-AS1
LocusID (NCBI) 106736475
Atlas_Id 77945
Location 11q14.1  [Link to chromosome band 11q14]
Location_base_pair Starts at 83185521 and ends at 83187484 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCF11-AS1   52263
Cards
Entrez_Gene (NCBI)PCF11-AS1  106736475  PCF11 antisense RNA 1
Aliases
GeneCards (Weizmann)PCF11-AS1
Ensembl hg19 (Hinxton)ENSG00000269939 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000269939 [Gene_View]  chr11:83185521-83187484 [Contig_View]  PCF11-AS1 [Vega]
ICGC DataPortalENSG00000269939
TCGA cBioPortalPCF11-AS1
AceView (NCBI)PCF11-AS1
Genatlas (Paris)PCF11-AS1
WikiGenes106736475
SOURCE (Princeton)PCF11-AS1
Genetics Home Reference (NIH)PCF11-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)PCF11-AS1  -     chr11:83185521-83187484 -  11q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCF11-AS1  -     11q14.1   [Description]    (hg19-Feb_2009)
EnsemblPCF11-AS1 - 11q14.1 [CytoView hg19]  PCF11-AS1 - 11q14.1 [CytoView hg38]
Mapping of homologs : NCBIPCF11-AS1 [Mapview hg19]  PCF11-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092827 BU687987
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCF11-AS1
Cluster EST : UnigeneHs.595343 [ NCBI ]
CGAP (NCI)Hs.595343
Alternative Splicing GalleryENSG00000269939
Gene ExpressionPCF11-AS1 [ NCBI-GEO ]   PCF11-AS1 [ EBI - ARRAY_EXPRESS ]   PCF11-AS1 [ SEEK ]   PCF11-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)PCF11-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)106736475
GTEX Portal (Tissue expression)PCF11-AS1
Human Protein AtlasENSG00000269939-PCF11-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PCF11-AS1
DMDM Disease mutations106736475
Blocks (Seattle)PCF11-AS1
Human Protein Atlas [tissue]ENSG00000269939-PCF11-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000269939
BioGRIDPCF11-AS1
STRING (EMBL)PCF11-AS1
ZODIACPCF11-AS1
Ontologies - Pathways
Huge Navigator PCF11-AS1 [HugePedia]
snp3D : Map Gene to Disease106736475
BioCentury BCIQPCF11-AS1
ClinGenPCF11-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD106736475
Clinical trialPCF11-AS1
Miscellaneous
canSAR (ICR)PCF11-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCF11-AS1
EVEXPCF11-AS1
GoPubMedPCF11-AS1
iHOPPCF11-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:24:59 CET 2017

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