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PCF11 (PCF11 cleavage and polyadenylation factor subunit)

Identity

Alias_namesPCF11, cleavage and polyadenylation factor II subunit, homolog (S. cerevisiae)
PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)
Alias_symbol (synonym)KIAA0824
Other alias-
HGNC (Hugo) PCF11
LocusID (NCBI) 51585
Atlas_Id 71759
Location 11q14.1  [Link to chromosome band 11q14]
Location_base_pair Starts at 83157095 and ends at 83185793 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PCF11 (11q14.1) / ANK2 (4q25)PCF11 (11q14.1) / KDM2A (11q13.2)PCF11 (11q14.1) / PCF11 (11q14.1)
PCF11 (11q14.1) / SPON1 (11p15.2)SPAG17 (1p12) / PCF11 (11q14.1)PCF11 SPON1
PCF11 KDM2A

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCF11   30097
Cards
Entrez_Gene (NCBI)PCF11  51585  PCF11 cleavage and polyadenylation factor subunit
Aliases
GeneCards (Weizmann)PCF11
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:83157095-83185793 [Contig_View]  PCF11 [Vega]
TCGA cBioPortalPCF11
AceView (NCBI)PCF11
Genatlas (Paris)PCF11
WikiGenes51585
SOURCE (Princeton)PCF11
Genetics Home Reference (NIH)PCF11
Genomic and cartography
GoldenPath hg38 (UCSC)PCF11  -     chr11:83157095-83185793 +  11q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCF11  -     11q14.1   [Description]    (hg19-Feb_2009)
EnsemblPCF11 - 11q14.1 [CytoView hg19]  PCF11 - 11q14.1 [CytoView hg38]
Mapping of homologs : NCBIPCF11 [Mapview hg19]  PCF11 [Mapview hg38]
OMIM608876   
Gene and transcription
Genbank (Entrez)AB020631 AF046935 AF086097 AK025103 AK302606
RefSeq transcript (Entrez)NM_001346413 NM_001346414 NM_001346415 NM_015885
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCF11
Cluster EST : UnigeneHs.731825 [ NCBI ]
CGAP (NCI)Hs.731825
Gene ExpressionPCF11 [ NCBI-GEO ]   PCF11 [ EBI - ARRAY_EXPRESS ]   PCF11 [ SEEK ]   PCF11 [ MEM ]
Gene Expression Viewer (FireBrowse)PCF11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51585
GTEX Portal (Tissue expression)PCF11
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94913   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94913  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94913
Splice isoforms : SwissVarO94913
PhosPhoSitePlusO94913
Domaine pattern : Prosite (Expaxy)CID (PS51391)   
Domains : Interpro (EBI)CID_dom    ENTH_VHS    RNA_pol_II-bd   
Domain families : Pfam (Sanger)CTD_bind (PF04818)   
Domain families : Pfam (NCBI)pfam04818   
Domain families : Smart (EMBL)RPR (SM00582)  
Conserved Domain (NCBI)PCF11
DMDM Disease mutations51585
Blocks (Seattle)PCF11
SuperfamilyO94913
Peptide AtlasO94913
HPRD10592
IPIIPI00016387   IPI01008804   IPI00922462   IPI00976129   IPI00789725   IPI00984750   
Protein Interaction databases
DIP (DOE-UCLA)O94913
IntAct (EBI)O94913
BioGRIDPCF11
STRING (EMBL)PCF11
ZODIACPCF11
Ontologies - Pathways
QuickGOO94913
Ontology : AmiGOmRNA splicing, via spliceosome  RNA polymerase II core binding  mRNA binding  nucleoplasm  nucleoplasm  cytoplasm  mitochondrion  mRNA cleavage factor complex  mRNA cleavage factor complex  termination of RNA polymerase II transcription  termination of RNA polymerase II transcription  mRNA polyadenylation  mRNA cleavage  mRNA cleavage  mRNA 3'-end processing  
Ontology : EGO-EBImRNA splicing, via spliceosome  RNA polymerase II core binding  mRNA binding  nucleoplasm  nucleoplasm  cytoplasm  mitochondrion  mRNA cleavage factor complex  mRNA cleavage factor complex  termination of RNA polymerase II transcription  termination of RNA polymerase II transcription  mRNA polyadenylation  mRNA cleavage  mRNA cleavage  mRNA 3'-end processing  
Pathways : KEGGmRNA surveillance pathway   
NDEx NetworkPCF11
Atlas of Cancer Signalling NetworkPCF11
Wikipedia pathwaysPCF11
Orthology - Evolution
OrthoDB51585
Phylogenetic Trees/Animal Genes : TreeFamPCF11
HOVERGENO94913
HOGENOMO94913
Homologs : HomoloGenePCF11
Homology/Alignments : Family Browser (UCSC)PCF11
Gene fusions - Rearrangements
Fusion: TCGAPCF11 SPON1
Fusion: TCGAPCF11 KDM2A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCF11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCF11
dbVarPCF11
ClinVarPCF11
1000_GenomesPCF11 
Exome Variant ServerPCF11
ExAC (Exome Aggregation Consortium)PCF11 (select the gene name)
Genetic variants : HAPMAP51585
Genomic Variants (DGV)PCF11 [DGVbeta]
DECIPHERPCF11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCF11 
Mutations
ICGC Data PortalPCF11 
TCGA Data PortalPCF11 
Broad Tumor PortalPCF11
OASIS PortalPCF11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCF11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCF11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCF11
DgiDB (Drug Gene Interaction Database)PCF11
DoCM (Curated mutations)PCF11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCF11 (select a term)
intoGenPCF11
Cancer3DPCF11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608876   
Orphanet
MedgenPCF11
Genetic Testing Registry PCF11
NextProtO94913 [Medical]
TSGene51585
GENETestsPCF11
Target ValidationPCF11
Huge Navigator PCF11 [HugePedia]
snp3D : Map Gene to Disease51585
BioCentury BCIQPCF11
ClinGenPCF11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51585
Chemical/Pharm GKB GenePA142671196
Clinical trialPCF11
Miscellaneous
canSAR (ICR)PCF11 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCF11
EVEXPCF11
GoPubMedPCF11
iHOPPCF11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:35:35 CEST 2017

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