Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PCGEM1 (PCGEM1, prostate-specific transcript (non-protein coding))

Identity

Alias_namesprostate-specific transcript 1 (non-protein coding)
Alias_symbol (synonym)NCRNA00071
LINC00071
PCAT9
Other alias
HGNC (Hugo) PCGEM1
LocusID (NCBI) 64002
Atlas_Id 41667
Location 2q32.3  [Link to chromosome band 2q32]
Location_base_pair Starts at 193614571 and ends at 193641625 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCGEM1   30145
Cards
Entrez_Gene (NCBI)PCGEM1  64002  PCGEM1, prostate-specific transcript (non-protein coding)
AliasesLINC00071; NCRNA00071; PCAT9
GeneCards (Weizmann)PCGEM1
Ensembl hg19 (Hinxton)ENSG00000227418 [Gene_View]  chr2:193614571-193641625 [Contig_View]  PCGEM1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000227418 [Gene_View]  chr2:193614571-193641625 [Contig_View]  PCGEM1 [Vega]
ICGC DataPortalENSG00000227418
TCGA cBioPortalPCGEM1
AceView (NCBI)PCGEM1
Genatlas (Paris)PCGEM1
WikiGenes64002
SOURCE (Princeton)PCGEM1
Genetics Home Reference (NIH)PCGEM1
Genomic and cartography
GoldenPath hg19 (UCSC)PCGEM1  -     chr2:193614571-193641625 +  2q32.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PCGEM1  -     2q32.3   [Description]    (hg38-Dec_2013)
EnsemblPCGEM1 - 2q32.3 [CytoView hg19]  PCGEM1 - 2q32.3 [CytoView hg38]
Mapping of homologs : NCBIPCGEM1 [Mapview hg19]  PCGEM1 [Mapview hg38]
OMIM605443   
Gene and transcription
Genbank (Entrez)AF223389 HG495079 HG495080 HG975429
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)PCGEM1
Cluster EST : UnigeneHs.546994 [ NCBI ]
CGAP (NCI)Hs.546994
Alternative Splicing GalleryENSG00000227418
Gene ExpressionPCGEM1 [ NCBI-GEO ]   PCGEM1 [ EBI - ARRAY_EXPRESS ]   PCGEM1 [ SEEK ]   PCGEM1 [ MEM ]
Gene Expression Viewer (FireBrowse)PCGEM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)64002
GTEX Portal (Tissue expression)PCGEM1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PCGEM1
DMDM Disease mutations64002
Blocks (Seattle)PCGEM1
Human Protein AtlasENSG00000227418
Protein Interaction databases
FunCoupENSG00000227418
BioGRIDPCGEM1
STRING (EMBL)PCGEM1
ZODIACPCGEM1
Ontologies - Pathways
Huge Navigator PCGEM1 [HugePedia]
snp3D : Map Gene to Disease64002
BioCentury BCIQPCGEM1
ClinGenPCGEM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64002
Chemical/Pharm GKB GenePA162398976
Clinical trialPCGEM1
Miscellaneous
canSAR (ICR)PCGEM1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCGEM1
EVEXPCGEM1
GoPubMedPCGEM1
iHOPPCGEM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:13:44 CEST 2017

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